miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 3' -44 NC_001806.1 + 43728 0.7 0.999816
Target:  5'- cGGggGGGAuuGGGGugACcgAGGCgCCCu -3'
miRNA:   3'- -UCuuUCUUuuCCCUugUG--UUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 44740 0.75 0.986231
Target:  5'- cGGuuGGAGGGGGGGGCGCcaguugcggGAACUgCCg -3'
miRNA:   3'- -UCuuUCUUUUCCCUUGUG---------UUUGAgGG- -5'
5627 3' -44 NC_001806.1 + 45337 0.67 0.999999
Target:  5'- cGAuGGGAucGGGGGCGCGcgguGCgagaCCCa -3'
miRNA:   3'- uCUuUCUUuuCCCUUGUGUu---UGa---GGG- -5'
5627 3' -44 NC_001806.1 + 45517 0.66 0.999999
Target:  5'- uGAGGGguGGGGGuGgAgGGugUCCCa -3'
miRNA:   3'- uCUUUCuuUUCCCuUgUgUUugAGGG- -5'
5627 3' -44 NC_001806.1 + 47470 0.71 0.99951
Target:  5'- uGguGGAAuGGGGGGACGCGuACgUCCCc -3'
miRNA:   3'- uCuuUCUU-UUCCCUUGUGUuUG-AGGG- -5'
5627 3' -44 NC_001806.1 + 48460 0.7 0.999816
Target:  5'- cGAucuGGAcauguuGGGGGACGgGGAUUCCCc -3'
miRNA:   3'- uCUu--UCUuu----UCCCUUGUgUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 49251 0.71 0.999612
Target:  5'- uGGAGGAGAuGGcGGGCgACGAGCcgCCCg -3'
miRNA:   3'- uCUUUCUUUuCC-CUUG-UGUUUGa-GGG- -5'
5627 3' -44 NC_001806.1 + 53609 0.67 0.999997
Target:  5'- gGGGAGGGAAGGGGAgaagaggagacgAgACAGAC-CgCa -3'
miRNA:   3'- -UCUUUCUUUUCCCU------------UgUGUUUGaGgG- -5'
5627 3' -44 NC_001806.1 + 54191 0.68 0.999983
Target:  5'- aGGAAAGcggcucAGGGGGAgGCGuuuuGCUCCa -3'
miRNA:   3'- -UCUUUCuu----UUCCCUUgUGUu---UGAGGg -5'
5627 3' -44 NC_001806.1 + 54260 0.7 0.99989
Target:  5'- uGAGGGAAGAGaGGGugGCGgcuuuauAGCgCCCa -3'
miRNA:   3'- uCUUUCUUUUC-CCUugUGU-------UUGaGGG- -5'
5627 3' -44 NC_001806.1 + 55090 0.68 0.999976
Target:  5'- cAGAGAcGggGGGcGGAACauGCGGACgcgcaCCCa -3'
miRNA:   3'- -UCUUU-CuuUUC-CCUUG--UGUUUGa----GGG- -5'
5627 3' -44 NC_001806.1 + 55384 0.66 0.999999
Target:  5'- cGGAgcGAuuGGGGGGgACGGAC-CCa -3'
miRNA:   3'- -UCUuuCUuuUCCCUUgUGUUUGaGGg -5'
5627 3' -44 NC_001806.1 + 56686 0.69 0.999939
Target:  5'- gGGggGGAcgGGGGccCGgGAAC-CCCg -3'
miRNA:   3'- -UCuuUCUuuUCCCuuGUgUUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 57157 0.74 0.994997
Target:  5'- cGAGGGGAGGGGGugcGCGCAuaaagCCCa -3'
miRNA:   3'- uCUUUCUUUUCCCu--UGUGUuuga-GGG- -5'
5627 3' -44 NC_001806.1 + 58065 0.67 0.999998
Target:  5'- -cAGAGGcccGGGAgGC-CGAGCUCCCg -3'
miRNA:   3'- ucUUUCUuuuCCCU-UGuGUUUGAGGG- -5'
5627 3' -44 NC_001806.1 + 58849 0.68 0.999988
Target:  5'- ---cAGggGcaGGAACACcuGCUCCCc -3'
miRNA:   3'- ucuuUCuuUucCCUUGUGuuUGAGGG- -5'
5627 3' -44 NC_001806.1 + 62247 0.67 0.999994
Target:  5'- gGGAGAGGGcuGGGGcCGCGGAaUCCa -3'
miRNA:   3'- -UCUUUCUUuuCCCUuGUGUUUgAGGg -5'
5627 3' -44 NC_001806.1 + 65291 0.67 0.999994
Target:  5'- gGGGAGGAGGAGGGG-----GGCcCCCa -3'
miRNA:   3'- -UCUUUCUUUUCCCUuguguUUGaGGG- -5'
5627 3' -44 NC_001806.1 + 65441 0.69 0.999939
Target:  5'- cGAAGGGAGcGGGGGAUGCcgcGGCcCCCg -3'
miRNA:   3'- uCUUUCUUU-UCCCUUGUGu--UUGaGGG- -5'
5627 3' -44 NC_001806.1 + 65908 0.77 0.97193
Target:  5'- aGGAAAccGggGAGGG-ACGCAAGCUCa- -3'
miRNA:   3'- -UCUUU--CuuUUCCCuUGUGUUUGAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.