miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5627 5' -50.8 NC_001806.1 + 30685 0.66 0.993016
Target:  5'- uCgGCGGCCUccg-CCUCUUccUCCUc-- -3'
miRNA:   3'- -GgCGCCGGAcaaaGGAGAA--AGGAaag -5'
5627 5' -50.8 NC_001806.1 + 74374 0.66 0.991959
Target:  5'- -gGCGGCCUGgc-UCUCcgUCCUg-- -3'
miRNA:   3'- ggCGCCGGACaaaGGAGaaAGGAaag -5'
5627 5' -50.8 NC_001806.1 + 144488 0.67 0.989466
Target:  5'- gCUGUGGCCUGUUUuugcugcgucaUCUCag-CCUUUa -3'
miRNA:   3'- -GGCGCCGGACAAA-----------GGAGaaaGGAAAg -5'
5627 5' -50.8 NC_001806.1 + 132509 0.67 0.984643
Target:  5'- cCCGgGGcCCUGgcccCCgUCUUUgCCUUUCu -3'
miRNA:   3'- -GGCgCC-GGACaaa-GG-AGAAA-GGAAAG- -5'
5627 5' -50.8 NC_001806.1 + 33682 0.67 0.984458
Target:  5'- cCCGCGGCCacauaaacaaugaCUCUgggCCUUUCu -3'
miRNA:   3'- -GGCGCCGGacaaag-------GAGAaa-GGAAAG- -5'
5627 5' -50.8 NC_001806.1 + 135818 0.67 0.98271
Target:  5'- cCCGCGG-CUGUUUCCgccCUUgCCg--- -3'
miRNA:   3'- -GGCGCCgGACAAAGGa--GAAaGGaaag -5'
5627 5' -50.8 NC_001806.1 + 137231 0.68 0.973111
Target:  5'- cCCGCaGGCCUGcc-CCUCagggagUUUCCgUUCg -3'
miRNA:   3'- -GGCG-CCGGACaaaGGAG------AAAGGaAAG- -5'
5627 5' -50.8 NC_001806.1 + 18231 0.68 0.970203
Target:  5'- gCGUGGUCUGUUUCuCUCcg-CCcUUCc -3'
miRNA:   3'- gGCGCCGGACAAAG-GAGaaaGGaAAG- -5'
5627 5' -50.8 NC_001806.1 + 98734 0.69 0.960144
Target:  5'- gCgGCGGCCU---UCUUCg--CCUUUCg -3'
miRNA:   3'- -GgCGCCGGAcaaAGGAGaaaGGAAAG- -5'
5627 5' -50.8 NC_001806.1 + 144667 0.7 0.947958
Target:  5'- gCCGCuGGUCUGUUUUUUCguuUUCCccgUUUCg -3'
miRNA:   3'- -GGCG-CCGGACAAAGGAGa--AAGG---AAAG- -5'
5627 5' -50.8 NC_001806.1 + 99209 1.11 0.006753
Target:  5'- uCCGCGGCCUGUUUCCUCUUUCCUUUCc -3'
miRNA:   3'- -GGCGCCGGACAAAGGAGAAAGGAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.