miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 3' -58.3 NC_001806.1 + 136077 0.67 0.73476
Target:  5'- ---cGCCCCAgCAGCaccuugaCGGACGCGg- -3'
miRNA:   3'- uucuUGGGGUgGUUGg------GCCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 126375 0.67 0.72502
Target:  5'- -uGGACCCCAgCGACCCcacGGccucCGCGUa -3'
miRNA:   3'- uuCUUGGGGUgGUUGGG---CCu---GCGCAg -5'
5628 3' -58.3 NC_001806.1 + 97354 0.67 0.72502
Target:  5'- --cGACCUCACCAccaagGCCCGGGCcacgGCGcCg -3'
miRNA:   3'- uucUUGGGGUGGU-----UGGGCCUG----CGCaG- -5'
5628 3' -58.3 NC_001806.1 + 28710 0.67 0.72502
Target:  5'- uGGGACCC--CCGACuCCGG-UGCGUCu -3'
miRNA:   3'- uUCUUGGGguGGUUG-GGCCuGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 141194 0.67 0.724041
Target:  5'- aAAGc-CCCCACCGAcaaaaacCCCGGACGuCGa- -3'
miRNA:   3'- -UUCuuGGGGUGGUU-------GGGCCUGC-GCag -5'
5628 3' -58.3 NC_001806.1 + 3582 0.67 0.75397
Target:  5'- cGAGGAUCCCcgcggcGCCGuACCCGGcgggcaccGCGCGcUCg -3'
miRNA:   3'- -UUCUUGGGG------UGGU-UGGGCC--------UGCGC-AG- -5'
5628 3' -58.3 NC_001806.1 + 119450 0.67 0.75397
Target:  5'- cAGGACgucaCCCGCCGccACCCGGuccgaGCGCGg- -3'
miRNA:   3'- uUCUUG----GGGUGGU--UGGGCC-----UGCGCag -5'
5628 3' -58.3 NC_001806.1 + 151315 0.67 0.772759
Target:  5'- -cGGGCCUCuggcGCCGGCUCGGGCGgGg- -3'
miRNA:   3'- uuCUUGGGG----UGGUUGGGCCUGCgCag -5'
5628 3' -58.3 NC_001806.1 + 54788 0.67 0.772759
Target:  5'- cAGcACCaggGCCAGCCCGGugGCauugcGUCg -3'
miRNA:   3'- uUCuUGGgg-UGGUUGGGCCugCG-----CAG- -5'
5628 3' -58.3 NC_001806.1 + 27298 0.67 0.772759
Target:  5'- cGGGGCCCgGCCAACCa----GCGUCc -3'
miRNA:   3'- uUCUUGGGgUGGUUGGgccugCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 25500 0.67 0.772759
Target:  5'- -cGAACCCCcCCGagggaGCgCgGGACGCGcCg -3'
miRNA:   3'- uuCUUGGGGuGGU-----UG-GgCCUGCGCaG- -5'
5628 3' -58.3 NC_001806.1 + 131503 0.67 0.763422
Target:  5'- cAAGuuGGCCCC-CgGACCCGGGC-CGUUu -3'
miRNA:   3'- -UUC--UUGGGGuGgUUGGGCCUGcGCAG- -5'
5628 3' -58.3 NC_001806.1 + 115334 0.67 0.763422
Target:  5'- --cGGCCaCgGCCAACCCGuGgGCGUCg -3'
miRNA:   3'- uucUUGG-GgUGGUUGGGCcUgCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 116424 0.67 0.763422
Target:  5'- cGGGGACCCCAUCAGCCuCGucccgccCGUGUUc -3'
miRNA:   3'- -UUCUUGGGGUGGUUGG-GCcu-----GCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 38208 0.67 0.763422
Target:  5'- uGGGGCCCUGCCGcuCCguCGGACgagGCGUCu -3'
miRNA:   3'- uUCUUGGGGUGGUu-GG--GCCUG---CGCAG- -5'
5628 3' -58.3 NC_001806.1 + 4379 0.67 0.762482
Target:  5'- cGGGggUCCuCGCCGccGCCCGGggcuuggGCGCGg- -3'
miRNA:   3'- -UUCuuGGG-GUGGU--UGGGCC-------UGCGCag -5'
5628 3' -58.3 NC_001806.1 + 24684 0.67 0.753019
Target:  5'- -cGGugCgCGCCGGCCCGGcccggugGCGCGg- -3'
miRNA:   3'- uuCUugGgGUGGUUGGGCC-------UGCGCag -5'
5628 3' -58.3 NC_001806.1 + 21297 0.67 0.751114
Target:  5'- gGAGGGCCCCcgcggcgggcACCGACgCCGGcgaggacgccggggACGcCGUCu -3'
miRNA:   3'- -UUCUUGGGG----------UGGUUG-GGCC--------------UGC-GCAG- -5'
5628 3' -58.3 NC_001806.1 + 52738 0.67 0.73476
Target:  5'- cGGGGcCCCCGCU--UCCGGAUGCGa- -3'
miRNA:   3'- -UUCUuGGGGUGGuuGGGCCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 26687 0.67 0.73476
Target:  5'- -cGGcCCCCACC-GCCCGG-CGUGg- -3'
miRNA:   3'- uuCUuGGGGUGGuUGGGCCuGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.