miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 3' -58.3 NC_001806.1 + 4482 0.71 0.544454
Target:  5'- -cGGACCCCGCCcgacGGCCCGcGccuCGCGUg -3'
miRNA:   3'- uuCUUGGGGUGG----UUGGGC-Cu--GCGCAg -5'
5628 3' -58.3 NC_001806.1 + 53836 0.71 0.534616
Target:  5'- cGAGGAUCUUGCCGA-CUGGACGCGUg -3'
miRNA:   3'- -UUCUUGGGGUGGUUgGGCCUGCGCAg -5'
5628 3' -58.3 NC_001806.1 + 69948 0.71 0.524841
Target:  5'- ----uCCUCGCCGACCCGGGCuuCGUCc -3'
miRNA:   3'- uucuuGGGGUGGUUGGGCCUGc-GCAG- -5'
5628 3' -58.3 NC_001806.1 + 149423 0.71 0.505502
Target:  5'- aGGGggUCCCACggCGAcCCCGGGCccuGCGUCu -3'
miRNA:   3'- -UUCuuGGGGUG--GUU-GGGCCUG---CGCAG- -5'
5628 3' -58.3 NC_001806.1 + 107647 0.71 0.505502
Target:  5'- --cGGCCUCGCCucGACCCuGACGCGUUg -3'
miRNA:   3'- uucUUGGGGUGG--UUGGGcCUGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 69435 0.71 0.495947
Target:  5'- -cGGACgCCCACCGGCCaCGGACucgGCGa- -3'
miRNA:   3'- uuCUUG-GGGUGGUUGG-GCCUG---CGCag -5'
5628 3' -58.3 NC_001806.1 + 81540 0.7 0.5944
Target:  5'- -cGAGCCCgCgcauGCCAagcGCCCGGACGCu-- -3'
miRNA:   3'- uuCUUGGG-G----UGGU---UGGGCCUGCGcag -5'
5628 3' -58.3 NC_001806.1 + 719 0.7 0.5944
Target:  5'- --cGGCCCCAgcCCucCCCGG-CGCGUCc -3'
miRNA:   3'- uucUUGGGGU--GGuuGGGCCuGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 98550 0.7 0.574295
Target:  5'- --cAACgCCGCCAuguuugcggGCCUGGGCGCGUUc -3'
miRNA:   3'- uucUUGgGGUGGU---------UGGGCCUGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 97810 0.7 0.5643
Target:  5'- ----cCCCCGCC-GCCCGGggccagcgccaACGCGUCc -3'
miRNA:   3'- uucuuGGGGUGGuUGGGCC-----------UGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 30296 0.7 0.5643
Target:  5'- cGGAGCCggCCGCCcGCCCcgcGGACGCG-Cg -3'
miRNA:   3'- uUCUUGG--GGUGGuUGGG---CCUGCGCaG- -5'
5628 3' -58.3 NC_001806.1 + 147758 0.69 0.624743
Target:  5'- -cGggUCCCgACgCGGCCgCGGACGCGg- -3'
miRNA:   3'- uuCuuGGGG-UG-GUUGG-GCCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 144602 0.69 0.624743
Target:  5'- cGGGccCCCCugCAGCCgGGGCggccaagggGCGUCg -3'
miRNA:   3'- -UUCuuGGGGugGUUGGgCCUG---------CGCAG- -5'
5628 3' -58.3 NC_001806.1 + 59000 0.69 0.624743
Target:  5'- aGGGcGCCCCcuccuCCGgcuGCCCgagGGACGCGUCc -3'
miRNA:   3'- -UUCuUGGGGu----GGU---UGGG---CCUGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 4958 0.69 0.624743
Target:  5'- cGGGGGCCCUcCCGuccCgCCGGGCGuCGUCg -3'
miRNA:   3'- -UUCUUGGGGuGGUu--G-GGCCUGC-GCAG- -5'
5628 3' -58.3 NC_001806.1 + 24552 0.69 0.624743
Target:  5'- cGGGGACCaccgaCGCCAuggcGCCCGG-CGCGcCg -3'
miRNA:   3'- -UUCUUGGg----GUGGU----UGGGCCuGCGCaG- -5'
5628 3' -58.3 NC_001806.1 + 23368 0.69 0.624743
Target:  5'- -cGGACgCCC-CCGGCUCGGACGCc-- -3'
miRNA:   3'- uuCUUG-GGGuGGUUGGGCCUGCGcag -5'
5628 3' -58.3 NC_001806.1 + 142030 0.69 0.614613
Target:  5'- gAGGAGCgCCGCCGGCCCuGACgaGCGa- -3'
miRNA:   3'- -UUCUUGgGGUGGUUGGGcCUG--CGCag -5'
5628 3' -58.3 NC_001806.1 + 30183 0.69 0.604496
Target:  5'- -cGGGCCCC-CCGcguCCgCGGcCGCGUCg -3'
miRNA:   3'- uuCUUGGGGuGGUu--GG-GCCuGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 92508 0.69 0.645011
Target:  5'- cAGAGCgCCUACCAgaaGCCCGacaaGCGCGUg -3'
miRNA:   3'- uUCUUG-GGGUGGU---UGGGCc---UGCGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.