miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 151695 0.67 0.728575
Target:  5'- -cGGgGGGGcCCGGGCUGcccGCCGccaccgcuuuaaaGGGCCg -3'
miRNA:   3'- aaCUgCUCC-GGUUCGAU---CGGC-------------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 2728 0.67 0.74906
Target:  5'- -gGuCGGGGCCcucGGCgGGCCGGcgcgacacGGCCa -3'
miRNA:   3'- aaCuGCUCCGGu--UCGaUCGGCU--------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 42000 0.67 0.739357
Target:  5'- -gGGCGAGGgcugcuCCGuGCUGGCCGcgggguugGGGUCg -3'
miRNA:   3'- aaCUGCUCC------GGUuCGAUCGGC--------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 23046 0.67 0.758661
Target:  5'- cUGcGCGuGGCCGgcGGC-AG-CGAGGCCg -3'
miRNA:   3'- aAC-UGCuCCGGU--UCGaUCgGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 32681 0.67 0.758661
Target:  5'- gUGGCGuGGCCGAcCuUAGCCucuGGGGCg -3'
miRNA:   3'- aACUGCuCCGGUUcG-AUCGG---CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 89253 0.67 0.709722
Target:  5'- -aGGCGGGGgucCCcGGCUGGCuccgCGAgGGCCg -3'
miRNA:   3'- aaCUGCUCC---GGuUCGAUCG----GCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 70680 0.67 0.719679
Target:  5'- -cGcACGAGGaCAAcguGCUGGCCGuGGUCc -3'
miRNA:   3'- aaC-UGCUCCgGUU---CGAUCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 120094 0.67 0.726604
Target:  5'- cUGGCGugccuccgggcccuGGGCCAGGCcauCCG-GGCCg -3'
miRNA:   3'- aACUGC--------------UCCGGUUCGaucGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 51795 0.67 0.709722
Target:  5'- -cGugGcGGCCAAGUacGCCGccaccguGGCCg -3'
miRNA:   3'- aaCugCuCCGGUUCGauCGGCu------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 65636 0.67 0.718686
Target:  5'- -gGGCGAgaggggccccggcGGCCucccccuggguGGCUGcGCUGGGGCCg -3'
miRNA:   3'- aaCUGCU-------------CCGGu----------UCGAU-CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 128146 0.67 0.718686
Target:  5'- aUGGCGAacagcacGGUCAGGC-AGaugagcaugcCCGGGGCCg -3'
miRNA:   3'- aACUGCU-------CCGGUUCGaUC----------GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 30416 0.67 0.719679
Target:  5'- -cGGgGGGGCCGGGCguggagggugGGCaCG-GGCCc -3'
miRNA:   3'- aaCUgCUCCGGUUCGa---------UCG-GCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 84073 0.67 0.719679
Target:  5'- -aGuCGGGGCCccAGCUGcgcgcugccGCgGAGGCCc -3'
miRNA:   3'- aaCuGCUCCGGu-UCGAU---------CGgCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 148085 0.67 0.719679
Target:  5'- -cGAUGGGcGCCGaggggGGCgcuguccgAGCCGcGGCCg -3'
miRNA:   3'- aaCUGCUC-CGGU-----UCGa-------UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 89578 0.67 0.719679
Target:  5'- -cGGCc-GGCCGGGCUuauggaccGCCGGcGGCCg -3'
miRNA:   3'- aaCUGcuCCGGUUCGAu-------CGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 3811 0.67 0.709722
Target:  5'- --cGCGuGcGCCAGGCcccAGCCGAagcGGCCg -3'
miRNA:   3'- aacUGCuC-CGGUUCGa--UCGGCU---CCGG- -5'
5628 5' -58.1 NC_001806.1 + 56508 0.67 0.739357
Target:  5'- ---cUGGGGCCAcagcGGCaGGCCcGGGCCc -3'
miRNA:   3'- aacuGCUCCGGU----UCGaUCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 151535 0.67 0.739357
Target:  5'- -cGGCGcccguGGGcCCGGGC-GGCCGGGGgCg -3'
miRNA:   3'- aaCUGC-----UCC-GGUUCGaUCGGCUCCgG- -5'
5628 5' -58.1 NC_001806.1 + 54080 0.67 0.748094
Target:  5'- -cGACGccaacccAGGCCGcGGCggggAGCCGAGcCCg -3'
miRNA:   3'- aaCUGC-------UCCGGU-UCGa---UCGGCUCcGG- -5'
5628 5' -58.1 NC_001806.1 + 5493 0.67 0.74906
Target:  5'- -cGGCGggaAGGagGAGC-AGCgGAGGCCg -3'
miRNA:   3'- aaCUGC---UCCggUUCGaUCGgCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.