miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 70507 0.67 0.74906
Target:  5'- -cGACcgccuGGGGCCcuGGCcccCCGAGGCCa -3'
miRNA:   3'- aaCUG-----CUCCGGu-UCGaucGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 21356 0.67 0.74906
Target:  5'- -cGACagcuGGCUcuGCUGGCCuccaugguagagGAGGCCg -3'
miRNA:   3'- aaCUGcu--CCGGuuCGAUCGG------------CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 5493 0.67 0.74906
Target:  5'- -cGGCGggaAGGagGAGC-AGCgGAGGCCg -3'
miRNA:   3'- aaCUGC---UCCggUUCGaUCGgCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 54080 0.67 0.748094
Target:  5'- -cGACGccaacccAGGCCGcGGCggggAGCCGAGcCCg -3'
miRNA:   3'- aaCUGC-------UCCGGU-UCGa---UCGGCUCcGG- -5'
5628 5' -58.1 NC_001806.1 + 151535 0.67 0.739357
Target:  5'- -cGGCGcccguGGGcCCGGGC-GGCCGGGGgCg -3'
miRNA:   3'- aaCUGC-----UCC-GGUUCGaUCGGCUCCgG- -5'
5628 5' -58.1 NC_001806.1 + 56508 0.67 0.739357
Target:  5'- ---cUGGGGCCAcagcGGCaGGCCcGGGCCc -3'
miRNA:   3'- aacuGCUCCGGU----UCGaUCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 4185 0.68 0.679495
Target:  5'- -gGGCgGGGGCCcGGC--GCCG-GGCCa -3'
miRNA:   3'- aaCUG-CUCCGGuUCGauCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 38489 0.68 0.679495
Target:  5'- aUGACcGGGCUGucGGCUGccGUCGGGGCUg -3'
miRNA:   3'- aACUGcUCCGGU--UCGAU--CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 84963 0.68 0.679495
Target:  5'- --cACGAGcGCCAGcGCUA-UCGGGGCCu -3'
miRNA:   3'- aacUGCUC-CGGUU-CGAUcGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 108895 0.68 0.679495
Target:  5'- gUUGAUGGcaucGGCCAAGacugGGUCGucGGGCCg -3'
miRNA:   3'- -AACUGCU----CCGGUUCga--UCGGC--UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 128282 0.68 0.679495
Target:  5'- -cGGCGcgagccGGGCCGAcgacGCgaugaugGGUCGGGGCCa -3'
miRNA:   3'- aaCUGC------UCCGGUU----CGa------UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 25632 0.68 0.689622
Target:  5'- -gGGCuGGGGCUggGgagGGCUGGGGCUg -3'
miRNA:   3'- aaCUG-CUCCGGuuCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 109155 0.68 0.679495
Target:  5'- -gGGUGAGGCCAgAGUcGGCgCGGGGCUc -3'
miRNA:   3'- aaCUGCUCCGGU-UCGaUCG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 58068 0.68 0.679495
Target:  5'- -aGGCccggGAGGCCGAGCUcccGGCUGAaggagaccccuGGCUa -3'
miRNA:   3'- aaCUG----CUCCGGUUCGA---UCGGCU-----------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 3356 0.68 0.679495
Target:  5'- cUGGCG-GGCCGGGCcccGGCCagccccggGAcGGCCg -3'
miRNA:   3'- aACUGCuCCGGUUCGa--UCGG--------CU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 1396 0.68 0.679495
Target:  5'- -aGcACGGuGCCGcugcGGCccgUGGCCGAGGCCc -3'
miRNA:   3'- aaC-UGCUcCGGU----UCG---AUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 119755 0.68 0.689622
Target:  5'- -cGGCGAcGGCCGGaCUGGCUGuGGaGCCg -3'
miRNA:   3'- aaCUGCU-CCGGUUcGAUCGGC-UC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 77537 0.68 0.689622
Target:  5'- ---cCGGGGCCccuGGUgcuGCgCGAGGCCa -3'
miRNA:   3'- aacuGCUCCGGu--UCGau-CG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 4833 0.68 0.699701
Target:  5'- -cGGCGAGGCC--GCggGGUCGGGcGUCg -3'
miRNA:   3'- aaCUGCUCCGGuuCGa-UCGGCUC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 29683 0.68 0.699701
Target:  5'- -gGGCGAGGaaaGGGCgGGCCGGGGa- -3'
miRNA:   3'- aaCUGCUCCgg-UUCGaUCGGCUCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.