Results 81 - 100 of 152 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 10541 | 0.68 | 0.66933 |
Target: 5'- ---cCGAGGCCAcuuGGCgAGCCGGGuCCu -3' miRNA: 3'- aacuGCUCCGGU---UCGaUCGGCUCcGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 3356 | 0.68 | 0.679495 |
Target: 5'- cUGGCG-GGCCGGGCcccGGCCagccccggGAcGGCCg -3' miRNA: 3'- aACUGCuCCGGUUCGa--UCGG--------CU-CCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 58068 | 0.68 | 0.679495 |
Target: 5'- -aGGCccggGAGGCCGAGCUcccGGCUGAaggagaccccuGGCUa -3' miRNA: 3'- aaCUG----CUCCGGUUCGA---UCGGCU-----------CCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 109155 | 0.68 | 0.679495 |
Target: 5'- -gGGUGAGGCCAgAGUcGGCgCGGGGCUc -3' miRNA: 3'- aaCUGCUCCGGU-UCGaUCG-GCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 4185 | 0.68 | 0.679495 |
Target: 5'- -gGGCgGGGGCCcGGC--GCCG-GGCCa -3' miRNA: 3'- aaCUG-CUCCGGuUCGauCGGCuCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 75769 | 0.69 | 0.62845 |
Target: 5'- uUUGACGuGGUCGAGCU--CCGucGCCu -3' miRNA: 3'- -AACUGCuCCGGUUCGAucGGCucCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 139234 | 0.69 | 0.627426 |
Target: 5'- -cGACGGccaacguGGCCGAGUuacUGGaaGAGGCCc -3' miRNA: 3'- aaCUGCU-------CCGGUUCG---AUCggCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 74872 | 0.69 | 0.617194 |
Target: 5'- cUGGCGAcccugcgGGCCucccugccggcGGGCUGGucggaccuccCCGAGGCCg -3' miRNA: 3'- aACUGCU-------CCGG-----------UUCGAUC----------GGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 84584 | 0.69 | 0.616171 |
Target: 5'- -cGACGAgcugcugcuccacaaGGCCAAGCUGGCCugcgggaacgaguucGAGGg- -3' miRNA: 3'- aaCUGCU---------------CCGGUUCGAUCGG---------------CUCCgg -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 73109 | 0.69 | 0.607994 |
Target: 5'- -cGACccGGCCGGGCcgccggucGCCGAGGCg -3' miRNA: 3'- aaCUGcuCCGGUUCGau------CGGCUCCGg -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 112328 | 0.69 | 0.607994 |
Target: 5'- -aGGCG-GGCCAccgccgggaGGCc-GUCGAGGCCu -3' miRNA: 3'- aaCUGCuCCGGU---------UCGauCGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 99647 | 0.69 | 0.62845 |
Target: 5'- gUGGCG-GGCCuGGCgggcaggcAGCUGGGGCa -3' miRNA: 3'- aACUGCuCCGGuUCGa-------UCGGCUCCGg -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 135969 | 0.69 | 0.62845 |
Target: 5'- -cGcACGAGGCgCGAGgcGGCCGAcccGGCCu -3' miRNA: 3'- aaC-UGCUCCG-GUUCgaUCGGCU---CCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 147662 | 0.69 | 0.62845 |
Target: 5'- -gGGCGGgcGGCC-GGCUccgccccgggGGCCGGGGCg -3' miRNA: 3'- aaCUGCU--CCGGuUCGA----------UCGGCUCCGg -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 38228 | 0.69 | 0.638685 |
Target: 5'- -gGACGAGGCgucuggguGCUGgguacGCCGGGGUCu -3' miRNA: 3'- aaCUGCUCCGguu-----CGAU-----CGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 90295 | 0.69 | 0.638685 |
Target: 5'- -cGGCuuuGAGGCCAAcgUGGCCGuGGUCg -3' miRNA: 3'- aaCUG---CUCCGGUUcgAUCGGCuCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 37317 | 0.69 | 0.607994 |
Target: 5'- gUGGCGAGGUUAuccAGCacAGCCGcGGUCg -3' miRNA: 3'- aACUGCUCCGGU---UCGa-UCGGCuCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 74340 | 0.69 | 0.597789 |
Target: 5'- --aGCGGGGCCAGacGCUGGacgcccCCGAGGaCCu -3' miRNA: 3'- aacUGCUCCGGUU--CGAUC------GGCUCC-GG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 24002 | 0.69 | 0.597789 |
Target: 5'- cUGGCGGcccuGGCCAaccGGCUgugcgGGCCGGacacGGCCg -3' miRNA: 3'- aACUGCU----CCGGU---UCGA-----UCGGCU----CCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 22032 | 0.69 | 0.648916 |
Target: 5'- -cGACGGGuaCGucAGCggggAGCCGuGGCCc -3' miRNA: 3'- aaCUGCUCcgGU--UCGa---UCGGCuCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home