miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 2521 0.7 0.591679
Target:  5'- -cGGCGGGGgCGGGCccGGCgcaccgcgcggcgauCGAGGCCa -3'
miRNA:   3'- aaCUGCUCCgGUUCGa-UCG---------------GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 119903 0.7 0.58761
Target:  5'- -cGGCGcuGGCCAcGGCccuGaCCGAGGCCu -3'
miRNA:   3'- aaCUGCu-CCGGU-UCGau-C-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 75729 0.7 0.58761
Target:  5'- -cGugGAGGCCGuGCUGGaCCGcguggaaagcGGuGCCg -3'
miRNA:   3'- aaCugCUCCGGUuCGAUC-GGC----------UC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 66804 0.7 0.586594
Target:  5'- -gGAgGAucacGGCCGAGCggGGCCGGcccggguGGCCg -3'
miRNA:   3'- aaCUgCU----CCGGUUCGa-UCGGCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 147241 0.7 0.577463
Target:  5'- -gGuCGGGGCCGAGgaGGaaGAGGCa -3'
miRNA:   3'- aaCuGCUCCGGUUCgaUCggCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 29435 0.7 0.57645
Target:  5'- -aGACccgcaugGAGGCCGAGgaGGCCGucaGGGCg -3'
miRNA:   3'- aaCUG-------CUCCGGUUCgaUCGGC---UCCGg -5'
5628 5' -58.1 NC_001806.1 + 2812 0.7 0.557293
Target:  5'- -gGGCGGGGgCGGGCUcgGGCCccgGGGGCg -3'
miRNA:   3'- aaCUGCUCCgGUUCGA--UCGG---CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 36665 0.7 0.557293
Target:  5'- -aGGgGGGGCCAcgugGGUUAuGuCCGGGGCCc -3'
miRNA:   3'- aaCUgCUCCGGU----UCGAU-C-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 74872 0.69 0.617194
Target:  5'- cUGGCGAcccugcgGGCCucccugccggcGGGCUGGucggaccuccCCGAGGCCg -3'
miRNA:   3'- aACUGCU-------CCGG-----------UUCGAUC----------GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 139234 0.69 0.627426
Target:  5'- -cGACGGccaacguGGCCGAGUuacUGGaaGAGGCCc -3'
miRNA:   3'- aaCUGCU-------CCGGUUCG---AUCggCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 75769 0.69 0.62845
Target:  5'- uUUGACGuGGUCGAGCU--CCGucGCCu -3'
miRNA:   3'- -AACUGCuCCGGUUCGAucGGCucCGG- -5'
5628 5' -58.1 NC_001806.1 + 99647 0.69 0.62845
Target:  5'- gUGGCG-GGCCuGGCgggcaggcAGCUGGGGCa -3'
miRNA:   3'- aACUGCuCCGGuUCGa-------UCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 135969 0.69 0.62845
Target:  5'- -cGcACGAGGCgCGAGgcGGCCGAcccGGCCu -3'
miRNA:   3'- aaC-UGCUCCG-GUUCgaUCGGCU---CCGG- -5'
5628 5' -58.1 NC_001806.1 + 84584 0.69 0.616171
Target:  5'- -cGACGAgcugcugcuccacaaGGCCAAGCUGGCCugcgggaacgaguucGAGGg- -3'
miRNA:   3'- aaCUGCU---------------CCGGUUCGAUCGG---------------CUCCgg -5'
5628 5' -58.1 NC_001806.1 + 73109 0.69 0.607994
Target:  5'- -cGACccGGCCGGGCcgccggucGCCGAGGCg -3'
miRNA:   3'- aaCUGcuCCGGUUCGau------CGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 112328 0.69 0.607994
Target:  5'- -aGGCG-GGCCAccgccgggaGGCc-GUCGAGGCCu -3'
miRNA:   3'- aaCUGCuCCGGU---------UCGauCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 37317 0.69 0.607994
Target:  5'- gUGGCGAGGUUAuccAGCacAGCCGcGGUCg -3'
miRNA:   3'- aACUGCUCCGGU---UCGa-UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 33661 0.69 0.597789
Target:  5'- gUGuCGcGGGCCGucuGCUGGcCCGcGGCCa -3'
miRNA:   3'- aACuGC-UCCGGUu--CGAUC-GGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 74340 0.69 0.597789
Target:  5'- --aGCGGGGCCAGacGCUGGacgcccCCGAGGaCCu -3'
miRNA:   3'- aacUGCUCCGGUU--CGAUC------GGCUCC-GG- -5'
5628 5' -58.1 NC_001806.1 + 147662 0.69 0.62845
Target:  5'- -gGGCGGgcGGCC-GGCUccgccccgggGGCCGGGGCg -3'
miRNA:   3'- aaCUGCU--CCGGuUCGA----------UCGGCUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.