miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 74340 0.69 0.597789
Target:  5'- --aGCGGGGCCAGacGCUGGacgcccCCGAGGaCCu -3'
miRNA:   3'- aacUGCUCCGGUU--CGAUC------GGCUCC-GG- -5'
5628 5' -58.1 NC_001806.1 + 33661 0.69 0.597789
Target:  5'- gUGuCGcGGGCCGucuGCUGGcCCGcGGCCa -3'
miRNA:   3'- aACuGC-UCCGGUu--CGAUC-GGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 37317 0.69 0.607994
Target:  5'- gUGGCGAGGUUAuccAGCacAGCCGcGGUCg -3'
miRNA:   3'- aACUGCUCCGGU---UCGa-UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 112328 0.69 0.607994
Target:  5'- -aGGCG-GGCCAccgccgggaGGCc-GUCGAGGCCu -3'
miRNA:   3'- aaCUGCuCCGGU---------UCGauCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 73109 0.69 0.607994
Target:  5'- -cGACccGGCCGGGCcgccggucGCCGAGGCg -3'
miRNA:   3'- aaCUGcuCCGGUUCGau------CGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 84584 0.69 0.616171
Target:  5'- -cGACGAgcugcugcuccacaaGGCCAAGCUGGCCugcgggaacgaguucGAGGg- -3'
miRNA:   3'- aaCUGCU---------------CCGGUUCGAUCGG---------------CUCCgg -5'
5628 5' -58.1 NC_001806.1 + 74872 0.69 0.617194
Target:  5'- cUGGCGAcccugcgGGCCucccugccggcGGGCUGGucggaccuccCCGAGGCCg -3'
miRNA:   3'- aACUGCU-------CCGG-----------UUCGAUC----------GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 38489 0.68 0.679495
Target:  5'- aUGACcGGGCUGucGGCUGccGUCGGGGCUg -3'
miRNA:   3'- aACUGcUCCGGU--UCGAU--CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 84963 0.68 0.679495
Target:  5'- --cACGAGcGCCAGcGCUA-UCGGGGCCu -3'
miRNA:   3'- aacUGCUC-CGGUU-CGAUcGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 108895 0.68 0.679495
Target:  5'- gUUGAUGGcaucGGCCAAGacugGGUCGucGGGCCg -3'
miRNA:   3'- -AACUGCU----CCGGUUCga--UCGGC--UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 128282 0.68 0.679495
Target:  5'- -cGGCGcgagccGGGCCGAcgacGCgaugaugGGUCGGGGCCa -3'
miRNA:   3'- aaCUGC------UCCGGUU----CGa------UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 25632 0.68 0.689622
Target:  5'- -gGGCuGGGGCUggGgagGGCUGGGGCUg -3'
miRNA:   3'- aaCUG-CUCCGGuuCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 4185 0.68 0.679495
Target:  5'- -gGGCgGGGGCCcGGC--GCCG-GGCCa -3'
miRNA:   3'- aaCUG-CUCCGGuUCGauCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 109155 0.68 0.679495
Target:  5'- -gGGUGAGGCCAgAGUcGGCgCGGGGCUc -3'
miRNA:   3'- aaCUGCUCCGGU-UCGaUCG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 58068 0.68 0.679495
Target:  5'- -aGGCccggGAGGCCGAGCUcccGGCUGAaggagaccccuGGCUa -3'
miRNA:   3'- aaCUG----CUCCGGUUCGA---UCGGCU-----------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 3356 0.68 0.679495
Target:  5'- cUGGCG-GGCCGGGCcccGGCCagccccggGAcGGCCg -3'
miRNA:   3'- aACUGCuCCGGUUCGa--UCGG--------CU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 1396 0.68 0.679495
Target:  5'- -aGcACGGuGCCGcugcGGCccgUGGCCGAGGCCc -3'
miRNA:   3'- aaC-UGCUcCGGU----UCG---AUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 10541 0.68 0.66933
Target:  5'- ---cCGAGGCCAcuuGGCgAGCCGGGuCCu -3'
miRNA:   3'- aacuGCUCCGGU---UCGaUCGGCUCcGG- -5'
5628 5' -58.1 NC_001806.1 + 143110 0.68 0.659134
Target:  5'- -cGACGcuggGGGCguGGCU-GCCGggagGGGCCg -3'
miRNA:   3'- aaCUGC----UCCGguUCGAuCGGC----UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 67217 0.68 0.689622
Target:  5'- cUGGCGGGGCgc-GCUGGU--GGGCCa -3'
miRNA:   3'- aACUGCUCCGguuCGAUCGgcUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.