miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 147662 0.69 0.62845
Target:  5'- -gGGCGGgcGGCC-GGCUccgccccgggGGCCGGGGCg -3'
miRNA:   3'- aaCUGCU--CCGGuUCGA----------UCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 90295 0.69 0.638685
Target:  5'- -cGGCuuuGAGGCCAAcgUGGCCGuGGUCg -3'
miRNA:   3'- aaCUG---CUCCGGUUcgAUCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 38228 0.69 0.638685
Target:  5'- -gGACGAGGCgucuggguGCUGgguacGCCGGGGUCu -3'
miRNA:   3'- aaCUGCUCCGguu-----CGAU-----CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 27940 0.69 0.648916
Target:  5'- -aGGCGGGGguaUAAGUUAGCCcuGGCCc -3'
miRNA:   3'- aaCUGCUCCg--GUUCGAUCGGcuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 29099 0.69 0.648916
Target:  5'- -aGACGGGGCU--GCUggGGCCGcaGGGCg -3'
miRNA:   3'- aaCUGCUCCGGuuCGA--UCGGC--UCCGg -5'
5628 5' -58.1 NC_001806.1 + 33120 0.69 0.648916
Target:  5'- -gGACGGGGCCcGGaccGCCGcGGUCg -3'
miRNA:   3'- aaCUGCUCCGGuUCgauCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22032 0.69 0.648916
Target:  5'- -cGACGGGuaCGucAGCggggAGCCGuGGCCc -3'
miRNA:   3'- aaCUGCUCcgGU--UCGa---UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 143110 0.68 0.659134
Target:  5'- -cGACGcuggGGGCguGGCU-GCCGggagGGGCCg -3'
miRNA:   3'- aaCUGC----UCCGguUCGAuCGGC----UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 146176 0.68 0.659134
Target:  5'- -gGAuCGGuGGUCAGGC-AGCCcGGGCCg -3'
miRNA:   3'- aaCU-GCU-CCGGUUCGaUCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 10541 0.68 0.66933
Target:  5'- ---cCGAGGCCAcuuGGCgAGCCGGGuCCu -3'
miRNA:   3'- aacuGCUCCGGU---UCGaUCGGCUCcGG- -5'
5628 5' -58.1 NC_001806.1 + 128282 0.68 0.679495
Target:  5'- -cGGCGcgagccGGGCCGAcgacGCgaugaugGGUCGGGGCCa -3'
miRNA:   3'- aaCUGC------UCCGGUU----CGa------UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 108895 0.68 0.679495
Target:  5'- gUUGAUGGcaucGGCCAAGacugGGUCGucGGGCCg -3'
miRNA:   3'- -AACUGCU----CCGGUUCga--UCGGC--UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 84963 0.68 0.679495
Target:  5'- --cACGAGcGCCAGcGCUA-UCGGGGCCu -3'
miRNA:   3'- aacUGCUC-CGGUU-CGAUcGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 38489 0.68 0.679495
Target:  5'- aUGACcGGGCUGucGGCUGccGUCGGGGCUg -3'
miRNA:   3'- aACUGcUCCGGU--UCGAU--CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 4185 0.68 0.679495
Target:  5'- -gGGCgGGGGCCcGGC--GCCG-GGCCa -3'
miRNA:   3'- aaCUG-CUCCGGuUCGauCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 109155 0.68 0.679495
Target:  5'- -gGGUGAGGCCAgAGUcGGCgCGGGGCUc -3'
miRNA:   3'- aaCUGCUCCGGU-UCGaUCG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 58068 0.68 0.679495
Target:  5'- -aGGCccggGAGGCCGAGCUcccGGCUGAaggagaccccuGGCUa -3'
miRNA:   3'- aaCUG----CUCCGGUUCGA---UCGGCU-----------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 3356 0.68 0.679495
Target:  5'- cUGGCG-GGCCGGGCcccGGCCagccccggGAcGGCCg -3'
miRNA:   3'- aACUGCuCCGGUUCGa--UCGG--------CU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 1396 0.68 0.679495
Target:  5'- -aGcACGGuGCCGcugcGGCccgUGGCCGAGGCCc -3'
miRNA:   3'- aaC-UGCUcCGGU----UCG---AUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 67217 0.68 0.689622
Target:  5'- cUGGCGGGGCgc-GCUGGU--GGGCCa -3'
miRNA:   3'- aACUGCUCCGguuCGAUCGgcUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.