Results 81 - 100 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 119755 | 0.68 | 0.689622 |
Target: 5'- -cGGCGAcGGCCGGaCUGGCUGuGGaGCCg -3' miRNA: 3'- aaCUGCU-CCGGUUcGAUCGGC-UC-CGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 54016 | 0.68 | 0.689622 |
Target: 5'- --cACGAGGCCc-GCgagGGCaCGAGGaCCa -3' miRNA: 3'- aacUGCUCCGGuuCGa--UCG-GCUCC-GG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 67217 | 0.68 | 0.689622 |
Target: 5'- cUGGCGGGGCgc-GCUGGU--GGGCCa -3' miRNA: 3'- aACUGCUCCGguuCGAUCGgcUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 25632 | 0.68 | 0.689622 |
Target: 5'- -gGGCuGGGGCUggGgagGGCUGGGGCUg -3' miRNA: 3'- aaCUG-CUCCGGuuCga-UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 4833 | 0.68 | 0.699701 |
Target: 5'- -cGGCGAGGCC--GCggGGUCGGGcGUCg -3' miRNA: 3'- aaCUGCUCCGGuuCGa-UCGGCUC-CGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 29683 | 0.68 | 0.699701 |
Target: 5'- -gGGCGAGGaaaGGGCgGGCCGGGGa- -3' miRNA: 3'- aaCUGCUCCgg-UUCGaUCGGCUCCgg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 27295 | 0.67 | 0.706722 |
Target: 5'- -cGGCGGGGCCcGGCcaaccAGCguccgccgagucuuCGGGGCCc -3' miRNA: 3'- aaCUGCUCCGGuUCGa----UCG--------------GCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 51795 | 0.67 | 0.709722 |
Target: 5'- -cGugGcGGCCAAGUacGCCGccaccguGGCCg -3' miRNA: 3'- aaCugCuCCGGUUCGauCGGCu------CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 84440 | 0.67 | 0.709722 |
Target: 5'- -gGACgGGGGCCGGuuugugagccuGCUucgggccgcggGGcCCGAGGCCa -3' miRNA: 3'- aaCUG-CUCCGGUU-----------CGA-----------UC-GGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 22146 | 0.67 | 0.709722 |
Target: 5'- -gGAgGAGGCgCGAcGCcGGuUCGAGGCCu -3' miRNA: 3'- aaCUgCUCCG-GUU-CGaUC-GGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 3811 | 0.67 | 0.709722 |
Target: 5'- --cGCGuGcGCCAGGCcccAGCCGAagcGGCCg -3' miRNA: 3'- aacUGCuC-CGGUUCGa--UCGGCU---CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 89253 | 0.67 | 0.709722 |
Target: 5'- -aGGCGGGGgucCCcGGCUGGCuccgCGAgGGCCg -3' miRNA: 3'- aaCUGCUCC---GGuUCGAUCG----GCU-CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 65636 | 0.67 | 0.718686 |
Target: 5'- -gGGCGAgaggggccccggcGGCCucccccuggguGGCUGcGCUGGGGCCg -3' miRNA: 3'- aaCUGCU-------------CCGGu----------UCGAU-CGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 128146 | 0.67 | 0.718686 |
Target: 5'- aUGGCGAacagcacGGUCAGGC-AGaugagcaugcCCGGGGCCg -3' miRNA: 3'- aACUGCU-------CCGGUUCGaUC----------GGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 89578 | 0.67 | 0.719679 |
Target: 5'- -cGGCc-GGCCGGGCUuauggaccGCCGGcGGCCg -3' miRNA: 3'- aaCUGcuCCGGUUCGAu-------CGGCU-CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 148085 | 0.67 | 0.719679 |
Target: 5'- -cGAUGGGcGCCGaggggGGCgcuguccgAGCCGcGGCCg -3' miRNA: 3'- aaCUGCUC-CGGU-----UCGa-------UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 84073 | 0.67 | 0.719679 |
Target: 5'- -aGuCGGGGCCccAGCUGcgcgcugccGCgGAGGCCc -3' miRNA: 3'- aaCuGCUCCGGu-UCGAU---------CGgCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 30416 | 0.67 | 0.719679 |
Target: 5'- -cGGgGGGGCCGGGCguggagggugGGCaCG-GGCCc -3' miRNA: 3'- aaCUgCUCCGGUUCGa---------UCG-GCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 70680 | 0.67 | 0.719679 |
Target: 5'- -cGcACGAGGaCAAcguGCUGGCCGuGGUCc -3' miRNA: 3'- aaC-UGCUCCgGUU---CGAUCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 120094 | 0.67 | 0.726604 |
Target: 5'- cUGGCGugccuccgggcccuGGGCCAGGCcauCCG-GGCCg -3' miRNA: 3'- aACUGC--------------UCCGGUUCGaucGGCuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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