miRNA display CGI


Results 121 - 140 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 68275 0.66 0.777517
Target:  5'- cUGGCcacGGCCAAGCUGcgcGCCGccauGGCg -3'
miRNA:   3'- aACUGcu-CCGGUUCGAU---CGGCu---CCGg -5'
5628 5' -58.1 NC_001806.1 + 21976 0.66 0.777517
Target:  5'- -cGGCG-GGUCGAGCUGgacGCCGAcGCg -3'
miRNA:   3'- aaCUGCuCCGGUUCGAU---CGGCUcCGg -5'
5628 5' -58.1 NC_001806.1 + 146069 0.66 0.777517
Target:  5'- -cGGCcaGAGGCCAGGUcAGUCcGGGCg -3'
miRNA:   3'- aaCUG--CUCCGGUUCGaUCGGcUCCGg -5'
5628 5' -58.1 NC_001806.1 + 76047 0.66 0.777517
Target:  5'- cUGGCGcGGCUucugcGGCUGGCgggGGGGCUg -3'
miRNA:   3'- aACUGCuCCGGu----UCGAUCGg--CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 10394 0.66 0.777517
Target:  5'- -gGGCGGGGggAGGCgggAGCCGGGGg- -3'
miRNA:   3'- aaCUGCUCCggUUCGa--UCGGCUCCgg -5'
5628 5' -58.1 NC_001806.1 + 2855 0.66 0.777517
Target:  5'- -gGGCGcggggagggGGGCgCGGGCguccgAGCCGGGGgCg -3'
miRNA:   3'- aaCUGC---------UCCG-GUUCGa----UCGGCUCCgG- -5'
5628 5' -58.1 NC_001806.1 + 150492 0.66 0.786754
Target:  5'- --aGCG-GGaaGGGC-GGCCGGGGCCg -3'
miRNA:   3'- aacUGCuCCggUUCGaUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 151322 0.66 0.786754
Target:  5'- cUGGCGccGGCuCGGGCggggGGCUGuccGGCCa -3'
miRNA:   3'- aACUGCu-CCG-GUUCGa---UCGGCu--CCGG- -5'
5628 5' -58.1 NC_001806.1 + 21465 0.66 0.786754
Target:  5'- aUGACGGGGaCGAGUacgacgacgcAGCCGAcGCCg -3'
miRNA:   3'- aACUGCUCCgGUUCGa---------UCGGCUcCGG- -5'
5628 5' -58.1 NC_001806.1 + 2662 0.66 0.786754
Target:  5'- -gGGCGGcGGCCGcgGGCgccGCCGuguGGCUg -3'
miRNA:   3'- aaCUGCU-CCGGU--UCGau-CGGCu--CCGG- -5'
5628 5' -58.1 NC_001806.1 + 132904 0.66 0.789499
Target:  5'- cUGGCGGcccuGGCCGaccucggggggagcgGGCUGGCgGAcccccacGGCCg -3'
miRNA:   3'- aACUGCU----CCGGU---------------UCGAUCGgCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 127023 0.66 0.795852
Target:  5'- -cGACGAcacgcucGCCGAGCUaugGGCCucucguucuccGGGGCCc -3'
miRNA:   3'- aaCUGCUc------CGGUUCGA---UCGG-----------CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 109231 0.66 0.795852
Target:  5'- -cGugG-GGCCGGGCggGGCgGAauccugGGCCc -3'
miRNA:   3'- aaCugCuCCGGUUCGa-UCGgCU------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 24876 0.66 0.795852
Target:  5'- -cGGCgGGGGCCGuggagguGCUgggGGCgGAGGCg -3'
miRNA:   3'- aaCUG-CUCCGGUu------CGA---UCGgCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 2393 0.66 0.795852
Target:  5'- cUGGCGcauccAGGCCGccaugcggcgcAGCgGGCCcGAGGCg -3'
miRNA:   3'- aACUGC-----UCCGGU-----------UCGaUCGG-CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 151449 0.66 0.795852
Target:  5'- -gGGCGGcGGCgGGGC-GGCCGcGGGCg -3'
miRNA:   3'- aaCUGCU-CCGgUUCGaUCGGC-UCCGg -5'
5628 5' -58.1 NC_001806.1 + 107020 0.66 0.795852
Target:  5'- --cGCGcuuGCCGGGUUGGCCGcccgcgGGGCCg -3'
miRNA:   3'- aacUGCuc-CGGUUCGAUCGGC------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 28175 0.66 0.795852
Target:  5'- --cGCGAGGUgAGG--GGCCGGGcGCCa -3'
miRNA:   3'- aacUGCUCCGgUUCgaUCGGCUC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 61544 0.66 0.795852
Target:  5'- -gGGCgGGGGCUuGGCgugcccGCCGAGGUa -3'
miRNA:   3'- aaCUG-CUCCGGuUCGau----CGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 97987 0.66 0.799451
Target:  5'- --aACGAGGCCcgcAAGCUGaaccccaacgccaucGCCucGGCCa -3'
miRNA:   3'- aacUGCUCCGG---UUCGAU---------------CGGcuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.