miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 84440 0.67 0.709722
Target:  5'- -gGACgGGGGCCGGuuugugagccuGCUucgggccgcggGGcCCGAGGCCa -3'
miRNA:   3'- aaCUG-CUCCGGUU-----------CGA-----------UC-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 89253 0.67 0.709722
Target:  5'- -aGGCGGGGgucCCcGGCUGGCuccgCGAgGGCCg -3'
miRNA:   3'- aaCUGCUCC---GGuUCGAUCG----GCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 3811 0.67 0.709722
Target:  5'- --cGCGuGcGCCAGGCcccAGCCGAagcGGCCg -3'
miRNA:   3'- aacUGCuC-CGGUUCGa--UCGGCU---CCGG- -5'
5628 5' -58.1 NC_001806.1 + 22146 0.67 0.709722
Target:  5'- -gGAgGAGGCgCGAcGCcGGuUCGAGGCCu -3'
miRNA:   3'- aaCUgCUCCG-GUU-CGaUC-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 51795 0.67 0.709722
Target:  5'- -cGugGcGGCCAAGUacGCCGccaccguGGCCg -3'
miRNA:   3'- aaCugCuCCGGUUCGauCGGCu------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 27295 0.67 0.706722
Target:  5'- -cGGCGGGGCCcGGCcaaccAGCguccgccgagucuuCGGGGCCc -3'
miRNA:   3'- aaCUGCUCCGGuUCGa----UCG--------------GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 29683 0.68 0.699701
Target:  5'- -gGGCGAGGaaaGGGCgGGCCGGGGa- -3'
miRNA:   3'- aaCUGCUCCgg-UUCGaUCGGCUCCgg -5'
5628 5' -58.1 NC_001806.1 + 4833 0.68 0.699701
Target:  5'- -cGGCGAGGCC--GCggGGUCGGGcGUCg -3'
miRNA:   3'- aaCUGCUCCGGuuCGa-UCGGCUC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 25632 0.68 0.689622
Target:  5'- -gGGCuGGGGCUggGgagGGCUGGGGCUg -3'
miRNA:   3'- aaCUG-CUCCGGuuCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 67217 0.68 0.689622
Target:  5'- cUGGCGGGGCgc-GCUGGU--GGGCCa -3'
miRNA:   3'- aACUGCUCCGguuCGAUCGgcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 54016 0.68 0.689622
Target:  5'- --cACGAGGCCc-GCgagGGCaCGAGGaCCa -3'
miRNA:   3'- aacUGCUCCGGuuCGa--UCG-GCUCC-GG- -5'
5628 5' -58.1 NC_001806.1 + 77537 0.68 0.689622
Target:  5'- ---cCGGGGCCccuGGUgcuGCgCGAGGCCa -3'
miRNA:   3'- aacuGCUCCGGu--UCGau-CG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 119755 0.68 0.689622
Target:  5'- -cGGCGAcGGCCGGaCUGGCUGuGGaGCCg -3'
miRNA:   3'- aaCUGCU-CCGGUUcGAUCGGC-UC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 109155 0.68 0.679495
Target:  5'- -gGGUGAGGCCAgAGUcGGCgCGGGGCUc -3'
miRNA:   3'- aaCUGCUCCGGU-UCGaUCG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 4185 0.68 0.679495
Target:  5'- -gGGCgGGGGCCcGGC--GCCG-GGCCa -3'
miRNA:   3'- aaCUG-CUCCGGuUCGauCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 58068 0.68 0.679495
Target:  5'- -aGGCccggGAGGCCGAGCUcccGGCUGAaggagaccccuGGCUa -3'
miRNA:   3'- aaCUG----CUCCGGUUCGA---UCGGCU-----------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 84963 0.68 0.679495
Target:  5'- --cACGAGcGCCAGcGCUA-UCGGGGCCu -3'
miRNA:   3'- aacUGCUC-CGGUU-CGAUcGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 108895 0.68 0.679495
Target:  5'- gUUGAUGGcaucGGCCAAGacugGGUCGucGGGCCg -3'
miRNA:   3'- -AACUGCU----CCGGUUCga--UCGGC--UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 128282 0.68 0.679495
Target:  5'- -cGGCGcgagccGGGCCGAcgacGCgaugaugGGUCGGGGCCa -3'
miRNA:   3'- aaCUGC------UCCGGUU----CGa------UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 3356 0.68 0.679495
Target:  5'- cUGGCG-GGCCGGGCcccGGCCagccccggGAcGGCCg -3'
miRNA:   3'- aACUGCuCCGGUUCGa--UCGG--------CU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.