Results 81 - 100 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 58068 | 0.68 | 0.679495 |
Target: 5'- -aGGCccggGAGGCCGAGCUcccGGCUGAaggagaccccuGGCUa -3' miRNA: 3'- aaCUG----CUCCGGUUCGA---UCGGCU-----------CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 3356 | 0.68 | 0.679495 |
Target: 5'- cUGGCG-GGCCGGGCcccGGCCagccccggGAcGGCCg -3' miRNA: 3'- aACUGCuCCGGUUCGa--UCGG--------CU-CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 10541 | 0.68 | 0.66933 |
Target: 5'- ---cCGAGGCCAcuuGGCgAGCCGGGuCCu -3' miRNA: 3'- aacuGCUCCGGU---UCGaUCGGCUCcGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 143110 | 0.68 | 0.659134 |
Target: 5'- -cGACGcuggGGGCguGGCU-GCCGggagGGGCCg -3' miRNA: 3'- aaCUGC----UCCGguUCGAuCGGC----UCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 146176 | 0.68 | 0.659134 |
Target: 5'- -gGAuCGGuGGUCAGGC-AGCCcGGGCCg -3' miRNA: 3'- aaCU-GCU-CCGGUUCGaUCGGcUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 33120 | 0.69 | 0.648916 |
Target: 5'- -gGACGGGGCCcGGaccGCCGcGGUCg -3' miRNA: 3'- aaCUGCUCCGGuUCgauCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 29099 | 0.69 | 0.648916 |
Target: 5'- -aGACGGGGCU--GCUggGGCCGcaGGGCg -3' miRNA: 3'- aaCUGCUCCGGuuCGA--UCGGC--UCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 27940 | 0.69 | 0.648916 |
Target: 5'- -aGGCGGGGguaUAAGUUAGCCcuGGCCc -3' miRNA: 3'- aaCUGCUCCg--GUUCGAUCGGcuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 22032 | 0.69 | 0.648916 |
Target: 5'- -cGACGGGuaCGucAGCggggAGCCGuGGCCc -3' miRNA: 3'- aaCUGCUCcgGU--UCGa---UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 90295 | 0.69 | 0.638685 |
Target: 5'- -cGGCuuuGAGGCCAAcgUGGCCGuGGUCg -3' miRNA: 3'- aaCUG---CUCCGGUUcgAUCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 38228 | 0.69 | 0.638685 |
Target: 5'- -gGACGAGGCgucuggguGCUGgguacGCCGGGGUCu -3' miRNA: 3'- aaCUGCUCCGguu-----CGAU-----CGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 147662 | 0.69 | 0.62845 |
Target: 5'- -gGGCGGgcGGCC-GGCUccgccccgggGGCCGGGGCg -3' miRNA: 3'- aaCUGCU--CCGGuUCGA----------UCGGCUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 75769 | 0.69 | 0.62845 |
Target: 5'- uUUGACGuGGUCGAGCU--CCGucGCCu -3' miRNA: 3'- -AACUGCuCCGGUUCGAucGGCucCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 99647 | 0.69 | 0.62845 |
Target: 5'- gUGGCG-GGCCuGGCgggcaggcAGCUGGGGCa -3' miRNA: 3'- aACUGCuCCGGuUCGa-------UCGGCUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 135969 | 0.69 | 0.62845 |
Target: 5'- -cGcACGAGGCgCGAGgcGGCCGAcccGGCCu -3' miRNA: 3'- aaC-UGCUCCG-GUUCgaUCGGCU---CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 139234 | 0.69 | 0.627426 |
Target: 5'- -cGACGGccaacguGGCCGAGUuacUGGaaGAGGCCc -3' miRNA: 3'- aaCUGCU-------CCGGUUCG---AUCggCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 74872 | 0.69 | 0.617194 |
Target: 5'- cUGGCGAcccugcgGGCCucccugccggcGGGCUGGucggaccuccCCGAGGCCg -3' miRNA: 3'- aACUGCU-------CCGG-----------UUCGAUC----------GGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 84584 | 0.69 | 0.616171 |
Target: 5'- -cGACGAgcugcugcuccacaaGGCCAAGCUGGCCugcgggaacgaguucGAGGg- -3' miRNA: 3'- aaCUGCU---------------CCGGUUCGAUCGG---------------CUCCgg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 73109 | 0.69 | 0.607994 |
Target: 5'- -cGACccGGCCGGGCcgccggucGCCGAGGCg -3' miRNA: 3'- aaCUGcuCCGGUUCGau------CGGCUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 112328 | 0.69 | 0.607994 |
Target: 5'- -aGGCG-GGCCAccgccgggaGGCc-GUCGAGGCCu -3' miRNA: 3'- aaCUGCuCCGGU---------UCGauCGGCUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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