Results 101 - 120 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 37317 | 0.69 | 0.607994 |
Target: 5'- gUGGCGAGGUUAuccAGCacAGCCGcGGUCg -3' miRNA: 3'- aACUGCUCCGGU---UCGa-UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 24002 | 0.69 | 0.597789 |
Target: 5'- cUGGCGGcccuGGCCAaccGGCUgugcgGGCCGGacacGGCCg -3' miRNA: 3'- aACUGCU----CCGGU---UCGA-----UCGGCU----CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 74340 | 0.69 | 0.597789 |
Target: 5'- --aGCGGGGCCAGacGCUGGacgcccCCGAGGaCCu -3' miRNA: 3'- aacUGCUCCGGUU--CGAUC------GGCUCC-GG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 33661 | 0.69 | 0.597789 |
Target: 5'- gUGuCGcGGGCCGucuGCUGGcCCGcGGCCa -3' miRNA: 3'- aACuGC-UCCGGUu--CGAUC-GGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 2521 | 0.7 | 0.591679 |
Target: 5'- -cGGCGGGGgCGGGCccGGCgcaccgcgcggcgauCGAGGCCa -3' miRNA: 3'- aaCUGCUCCgGUUCGa-UCG---------------GCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 119903 | 0.7 | 0.58761 |
Target: 5'- -cGGCGcuGGCCAcGGCccuGaCCGAGGCCu -3' miRNA: 3'- aaCUGCu-CCGGU-UCGau-C-GGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 75729 | 0.7 | 0.58761 |
Target: 5'- -cGugGAGGCCGuGCUGGaCCGcguggaaagcGGuGCCg -3' miRNA: 3'- aaCugCUCCGGUuCGAUC-GGC----------UC-CGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 66804 | 0.7 | 0.586594 |
Target: 5'- -gGAgGAucacGGCCGAGCggGGCCGGcccggguGGCCg -3' miRNA: 3'- aaCUgCU----CCGGUUCGa-UCGGCU-------CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 147241 | 0.7 | 0.577463 |
Target: 5'- -gGuCGGGGCCGAGgaGGaaGAGGCa -3' miRNA: 3'- aaCuGCUCCGGUUCgaUCggCUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 29435 | 0.7 | 0.57645 |
Target: 5'- -aGACccgcaugGAGGCCGAGgaGGCCGucaGGGCg -3' miRNA: 3'- aaCUG-------CUCCGGUUCgaUCGGC---UCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 2812 | 0.7 | 0.557293 |
Target: 5'- -gGGCGGGGgCGGGCUcgGGCCccgGGGGCg -3' miRNA: 3'- aaCUGCUCCgGUUCGA--UCGG---CUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 36665 | 0.7 | 0.557293 |
Target: 5'- -aGGgGGGGCCAcgugGGUUAuGuCCGGGGCCc -3' miRNA: 3'- aaCUgCUCCGGU----UCGAU-C-GGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 39537 | 0.71 | 0.527439 |
Target: 5'- -cGAUGcGGCCugcguAGUucaagagguaggUGGCCGGGGCCa -3' miRNA: 3'- aaCUGCuCCGGu----UCG------------AUCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 27028 | 0.71 | 0.527439 |
Target: 5'- gUGGCgGAGGCCgAGGCggucaucgGGCCGugccugGGGCCc -3' miRNA: 3'- aACUG-CUCCGG-UUCGa-------UCGGC------UCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 128420 | 0.71 | 0.526454 |
Target: 5'- -gGACGuaaaccagguGGGCC-AGCUGGCUGAugcgaugGGCCa -3' miRNA: 3'- aaCUGC----------UCCGGuUCGAUCGGCU-------CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 32963 | 0.71 | 0.517618 |
Target: 5'- -gGGcCGGGGCCccuuGGGUccGCCGGGGCCc -3' miRNA: 3'- aaCU-GCUCCGG----UUCGauCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 37768 | 0.71 | 0.517618 |
Target: 5'- -cGGCGGGcGCCuuucGCUccggGGCCGGGGCg -3' miRNA: 3'- aaCUGCUC-CGGuu--CGA----UCGGCUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 14015 | 0.71 | 0.51176 |
Target: 5'- -gGACGAuagugucacacGGCCGGGCuaccgcgaucuuuauUgggGGCCGGGGCCa -3' miRNA: 3'- aaCUGCU-----------CCGGUUCG---------------A---UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 92459 | 0.71 | 0.498201 |
Target: 5'- --cGCGAGcGCCAAcGCgu-CCGAGGCCg -3' miRNA: 3'- aacUGCUC-CGGUU-CGaucGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 30022 | 0.71 | 0.498201 |
Target: 5'- gUUGAagcgGAGGCgGGGC-GGCCGAggGGCCg -3' miRNA: 3'- -AACUg---CUCCGgUUCGaUCGGCU--CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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