miRNA display CGI


Results 121 - 140 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 74599 0.71 0.479117
Target:  5'- -cGACGAcGG-CGGGCUGucGCCaGAGGCCa -3'
miRNA:   3'- aaCUGCU-CCgGUUCGAU--CGG-CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22767 0.71 0.479117
Target:  5'- -cGACGAcGCCGGGCgccgcGCCcAGGCCg -3'
miRNA:   3'- aaCUGCUcCGGUUCGau---CGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 59118 0.71 0.476285
Target:  5'- gUGACGAGG-UggGCUucgguggugagggcAGCCG-GGCCg -3'
miRNA:   3'- aACUGCUCCgGuuCGA--------------UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 5107 0.72 0.460399
Target:  5'- -cGGUGGGGCCcGGggAGCCGGGGCg -3'
miRNA:   3'- aaCUGCUCCGGuUCgaUCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 23924 0.72 0.460399
Target:  5'- -gGGCGAGGaCCuGGCcGGCggCGGGGCCu -3'
miRNA:   3'- aaCUGCUCC-GGuUCGaUCG--GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22417 0.72 0.460399
Target:  5'- aUGGCGGccGGCC--GCUucGGCUGGGGCCu -3'
miRNA:   3'- aACUGCU--CCGGuuCGA--UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 137736 0.72 0.440265
Target:  5'- -cGACGAGGCCGGGCUccuuGGgCGucaccuccucacGGCCg -3'
miRNA:   3'- aaCUGCUCCGGUUCGA----UCgGCu-----------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 11840 0.72 0.433069
Target:  5'- -gGugGAGGCCugguuaggggcGGGUUGguauacgcucGCCGGGGCCa -3'
miRNA:   3'- aaCugCUCCGG-----------UUCGAU----------CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 4608 0.72 0.433069
Target:  5'- -cGACGAGGUCGAuGac-GCCGAuGGCCg -3'
miRNA:   3'- aaCUGCUCCGGUU-CgauCGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 50511 0.72 0.424171
Target:  5'- -cGugGGGGCCGAGCa---CGAGGCg -3'
miRNA:   3'- aaCugCUCCGGUUCGaucgGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 4720 0.72 0.424171
Target:  5'- --aGCGGGGCCucccguucgcGGCcccgGGCCGGGGCCc -3'
miRNA:   3'- aacUGCUCCGGu---------UCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 151279 0.73 0.418884
Target:  5'- -gGugGGGGCCGgggccggggggcggcGGCggugGGCCG-GGCCu -3'
miRNA:   3'- aaCugCUCCGGU---------------UCGa---UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 76894 0.73 0.418884
Target:  5'- -cGuCGAGGCCcugcggaggucucucGAGgaGGCCGAGGCg -3'
miRNA:   3'- aaCuGCUCCGG---------------UUCgaUCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 93469 0.73 0.415383
Target:  5'- -gGACGcGGCCcuggagguGGCgcacgaGGCCGAGGCCc -3'
miRNA:   3'- aaCUGCuCCGGu-------UCGa-----UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 131495 0.73 0.415383
Target:  5'- -cGA-GGGGCCAAGUUGGCCcccggacccGGGCCg -3'
miRNA:   3'- aaCUgCUCCGGUUCGAUCGGc--------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 77506 0.73 0.388864
Target:  5'- -gGGCGAGGCguaccugCGAGUgAGCgGAGGCCc -3'
miRNA:   3'- aaCUGCUCCG-------GUUCGaUCGgCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 20622 0.74 0.357118
Target:  5'- -gGGCGGGGCCGggGGUUcgaccaacgGGCCGcGGCCa -3'
miRNA:   3'- aaCUGCUCCGGU--UCGA---------UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 73444 0.74 0.340794
Target:  5'- -gGACGcacacccAGGCCGGGgUGGCCGGcccGGCCg -3'
miRNA:   3'- aaCUGC-------UCCGGUUCgAUCGGCU---CCGG- -5'
5628 5' -58.1 NC_001806.1 + 132984 0.75 0.326495
Target:  5'- -gGugGuGGCCGcucccucagAGCccugGGCCGGGGCCg -3'
miRNA:   3'- aaCugCuCCGGU---------UCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 94189 0.75 0.326495
Target:  5'- ---cUGAGGCCGGGCcuggaggcccaGGCCGGGGCCu -3'
miRNA:   3'- aacuGCUCCGGUUCGa----------UCGGCUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.