Results 141 - 152 of 152 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 92923 | 0.75 | 0.31915 |
Target: 5'- -gGGCGGGG-CGGGCcuggaGGCCGGGGCCc -3' miRNA: 3'- aaCUGCUCCgGUUCGa----UCGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 57032 | 0.76 | 0.284293 |
Target: 5'- cUGG-GuGGCCGGGCccggGGCCGGGGCCc -3' miRNA: 3'- aACUgCuCCGGUUCGa---UCGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 25536 | 0.76 | 0.264862 |
Target: 5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3' miRNA: 3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 25568 | 0.76 | 0.264862 |
Target: 5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3' miRNA: 3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 25600 | 0.76 | 0.264862 |
Target: 5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3' miRNA: 3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 76581 | 0.76 | 0.264862 |
Target: 5'- --cGCGAGcGCCGGGCccAGCuCGAGGCCg -3' miRNA: 3'- aacUGCUC-CGGUUCGa-UCG-GCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 51597 | 0.77 | 0.246521 |
Target: 5'- -gGGCGAGGUgGAGCUGcCCGGcGGCCa -3' miRNA: 3'- aaCUGCUCCGgUUCGAUcGGCU-CCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 150997 | 0.78 | 0.202734 |
Target: 5'- -cGGCGc-GCCAGGCgggcGGCCGAGGCCc -3' miRNA: 3'- aaCUGCucCGGUUCGa---UCGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 77121 | 0.79 | 0.17447 |
Target: 5'- ----aGAGcGCCGAGCgGGCCGGGGCCg -3' miRNA: 3'- aacugCUC-CGGUUCGaUCGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 34402 | 0.8 | 0.157629 |
Target: 5'- -cGGCGGuGGCCGGGCcgGGCCG-GGCCg -3' miRNA: 3'- aaCUGCU-CCGGUUCGa-UCGGCuCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 22863 | 0.81 | 0.12179 |
Target: 5'- -cGGCGAccuggcGGCCGucccggGGCUGGCCGGGGCCc -3' miRNA: 3'- aaCUGCU------CCGGU------UCGAUCGGCUCCGG- -5' |
|||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 98871 | 1.08 | 0.001738 |
Target: 5'- uUUGACGAGGCCAAGCUAGCCGAGGCCc -3' miRNA: 3'- -AACUGCUCCGGUUCGAUCGGCUCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home