miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 38228 0.69 0.638685
Target:  5'- -gGACGAGGCgucuggguGCUGgguacGCCGGGGUCu -3'
miRNA:   3'- aaCUGCUCCGguu-----CGAU-----CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 38489 0.68 0.679495
Target:  5'- aUGACcGGGCUGucGGCUGccGUCGGGGCUg -3'
miRNA:   3'- aACUGcUCCGGU--UCGAU--CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 39537 0.71 0.527439
Target:  5'- -cGAUGcGGCCugcguAGUucaagagguaggUGGCCGGGGCCa -3'
miRNA:   3'- aaCUGCuCCGGu----UCG------------AUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 42000 0.67 0.739357
Target:  5'- -gGGCGAGGgcugcuCCGuGCUGGCCGcgggguugGGGUCg -3'
miRNA:   3'- aaCUGCUCC------GGUuCGAUCGGC--------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 50511 0.72 0.424171
Target:  5'- -cGugGGGGCCGAGCa---CGAGGCg -3'
miRNA:   3'- aaCugCUCCGGUUCGaucgGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 51597 0.77 0.246521
Target:  5'- -gGGCGAGGUgGAGCUGcCCGGcGGCCa -3'
miRNA:   3'- aaCUGCUCCGgUUCGAUcGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 51795 0.67 0.709722
Target:  5'- -cGugGcGGCCAAGUacGCCGccaccguGGCCg -3'
miRNA:   3'- aaCugCuCCGGUUCGauCGGCu------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 54016 0.68 0.689622
Target:  5'- --cACGAGGCCc-GCgagGGCaCGAGGaCCa -3'
miRNA:   3'- aacUGCUCCGGuuCGa--UCG-GCUCC-GG- -5'
5628 5' -58.1 NC_001806.1 + 54080 0.67 0.748094
Target:  5'- -cGACGccaacccAGGCCGcGGCggggAGCCGAGcCCg -3'
miRNA:   3'- aaCUGC-------UCCGGU-UCGa---UCGGCUCcGG- -5'
5628 5' -58.1 NC_001806.1 + 56508 0.67 0.739357
Target:  5'- ---cUGGGGCCAcagcGGCaGGCCcGGGCCc -3'
miRNA:   3'- aacuGCUCCGGU----UCGaUCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 57032 0.76 0.284293
Target:  5'- cUGG-GuGGCCGGGCccggGGCCGGGGCCc -3'
miRNA:   3'- aACUgCuCCGGUUCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 58068 0.68 0.679495
Target:  5'- -aGGCccggGAGGCCGAGCUcccGGCUGAaggagaccccuGGCUa -3'
miRNA:   3'- aaCUG----CUCCGGUUCGA---UCGGCU-----------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 59118 0.71 0.476285
Target:  5'- gUGACGAGG-UggGCUucgguggugagggcAGCCG-GGCCg -3'
miRNA:   3'- aACUGCUCCgGuuCGA--------------UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 61544 0.66 0.795852
Target:  5'- -gGGCgGGGGCUuGGCgugcccGCCGAGGUa -3'
miRNA:   3'- aaCUG-CUCCGGuUCGau----CGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 65636 0.67 0.718686
Target:  5'- -gGGCGAgaggggccccggcGGCCucccccuggguGGCUGcGCUGGGGCCg -3'
miRNA:   3'- aaCUGCU-------------CCGGu----------UCGAU-CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 66804 0.7 0.586594
Target:  5'- -gGAgGAucacGGCCGAGCggGGCCGGcccggguGGCCg -3'
miRNA:   3'- aaCUgCU----CCGGUUCGa-UCGGCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 67217 0.68 0.689622
Target:  5'- cUGGCGGGGCgc-GCUGGU--GGGCCa -3'
miRNA:   3'- aACUGCUCCGguuCGAUCGgcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 68275 0.66 0.777517
Target:  5'- cUGGCcacGGCCAAGCUGcgcGCCGccauGGCg -3'
miRNA:   3'- aACUGcu-CCGGUUCGAU---CGGCu---CCGg -5'
5628 5' -58.1 NC_001806.1 + 70507 0.67 0.74906
Target:  5'- -cGACcgccuGGGGCCcuGGCcccCCGAGGCCa -3'
miRNA:   3'- aaCUG-----CUCCGGu-UCGaucGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 70680 0.67 0.719679
Target:  5'- -cGcACGAGGaCAAcguGCUGGCCGuGGUCc -3'
miRNA:   3'- aaC-UGCUCCgGUU---CGAUCGGCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.