miRNA display CGI


Results 101 - 120 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 90295 0.69 0.638685
Target:  5'- -cGGCuuuGAGGCCAAcgUGGCCGuGGUCg -3'
miRNA:   3'- aaCUG---CUCCGGUUcgAUCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 91156 0.67 0.74906
Target:  5'- cUGuuCGAgGGCCAGGacacGGCCGcGGCCc -3'
miRNA:   3'- aACu-GCU-CCGGUUCga--UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 92459 0.71 0.498201
Target:  5'- --cGCGAGcGCCAAcGCgu-CCGAGGCCg -3'
miRNA:   3'- aacUGCUC-CGGUU-CGaucGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 92923 0.75 0.31915
Target:  5'- -gGGCGGGG-CGGGCcuggaGGCCGGGGCCc -3'
miRNA:   3'- aaCUGCUCCgGUUCGa----UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 93469 0.73 0.415383
Target:  5'- -gGACGcGGCCcuggagguGGCgcacgaGGCCGAGGCCc -3'
miRNA:   3'- aaCUGCuCCGGu-------UCGa-----UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 94189 0.75 0.326495
Target:  5'- ---cUGAGGCCGGGCcuggaggcccaGGCCGGGGCCu -3'
miRNA:   3'- aacuGCUCCGGUUCGa----------UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 95526 0.66 0.768149
Target:  5'- cUGACGAagcGGUCGuuGGCcAGCCuGGGGCg -3'
miRNA:   3'- aACUGCU---CCGGU--UCGaUCGG-CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 97987 0.66 0.799451
Target:  5'- --aACGAGGCCcgcAAGCUGaaccccaacgccaucGCCucGGCCa -3'
miRNA:   3'- aacUGCUCCGG---UUCGAU---------------CGGcuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 98871 1.08 0.001738
Target:  5'- uUUGACGAGGCCAAGCUAGCCGAGGCCc -3'
miRNA:   3'- -AACUGCUCCGGUUCGAUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 99647 0.69 0.62845
Target:  5'- gUGGCG-GGCCuGGCgggcaggcAGCUGGGGCa -3'
miRNA:   3'- aACUGCuCCGGuUCGa-------UCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 104898 0.67 0.758661
Target:  5'- aUGACcccccAGGCCGuGCUGGCguuCGuGGCCc -3'
miRNA:   3'- aACUGc----UCCGGUuCGAUCG---GCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 107020 0.66 0.795852
Target:  5'- --cGCGcuuGCCGGGUUGGCCGcccgcgGGGCCg -3'
miRNA:   3'- aacUGCuc-CGGUUCGAUCGGC------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 107464 0.66 0.804803
Target:  5'- -cGACcuccGGaCCGcGCUGGCCcGGGCCg -3'
miRNA:   3'- aaCUGcu--CC-GGUuCGAUCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 108895 0.68 0.679495
Target:  5'- gUUGAUGGcaucGGCCAAGacugGGUCGucGGGCCg -3'
miRNA:   3'- -AACUGCU----CCGGUUCga--UCGGC--UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 109155 0.68 0.679495
Target:  5'- -gGGUGAGGCCAgAGUcGGCgCGGGGCUc -3'
miRNA:   3'- aaCUGCUCCGGU-UCGaUCG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 109231 0.66 0.795852
Target:  5'- -cGugG-GGCCGGGCggGGCgGAauccugGGCCc -3'
miRNA:   3'- aaCugCuCCGGUUCGa-UCGgCU------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 112328 0.69 0.607994
Target:  5'- -aGGCG-GGCCAccgccgggaGGCc-GUCGAGGCCu -3'
miRNA:   3'- aaCUGCuCCGGU---------UCGauCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 113873 0.66 0.804803
Target:  5'- --cGCGAcuGCCGGGUUAGCgCGggGGGCCa -3'
miRNA:   3'- aacUGCUc-CGGUUCGAUCG-GC--UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 119591 0.66 0.777517
Target:  5'- cUGGCG-GGUCugGAGCcccccGGCgGGGGCCg -3'
miRNA:   3'- aACUGCuCCGG--UUCGa----UCGgCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 119755 0.68 0.689622
Target:  5'- -cGGCGAcGGCCGGaCUGGCUGuGGaGCCg -3'
miRNA:   3'- aaCUGCU-CCGGUUcGAUCGGC-UC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.