miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 134929 0.66 0.812725
Target:  5'- -cGGCGAuGGCCu-GCUugaggaugguggcGGCCGAccccucaucgucGGCCg -3'
miRNA:   3'- aaCUGCU-CCGGuuCGA-------------UCGGCU------------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 132984 0.75 0.326495
Target:  5'- -gGugGuGGCCGcucccucagAGCccugGGCCGGGGCCg -3'
miRNA:   3'- aaCugCuCCGGU---------UCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 132904 0.66 0.789499
Target:  5'- cUGGCGGcccuGGCCGaccucggggggagcgGGCUGGCgGAcccccacGGCCg -3'
miRNA:   3'- aACUGCU----CCGGU---------------UCGAUCGgCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 131495 0.73 0.415383
Target:  5'- -cGA-GGGGCCAAGUUGGCCcccggacccGGGCCg -3'
miRNA:   3'- aaCUgCUCCGGUUCGAUCGGc--------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 128420 0.71 0.526454
Target:  5'- -gGACGuaaaccagguGGGCC-AGCUGGCUGAugcgaugGGCCa -3'
miRNA:   3'- aaCUGC----------UCCGGuUCGAUCGGCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 128282 0.68 0.679495
Target:  5'- -cGGCGcgagccGGGCCGAcgacGCgaugaugGGUCGGGGCCa -3'
miRNA:   3'- aaCUGC------UCCGGUU----CGa------UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 128146 0.67 0.718686
Target:  5'- aUGGCGAacagcacGGUCAGGC-AGaugagcaugcCCGGGGCCg -3'
miRNA:   3'- aACUGCU-------CCGGUUCGaUC----------GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 127023 0.66 0.795852
Target:  5'- -cGACGAcacgcucGCCGAGCUaugGGCCucucguucuccGGGGCCc -3'
miRNA:   3'- aaCUGCUc------CGGUUCGA---UCGG-----------CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 126142 0.67 0.74906
Target:  5'- -cGGCGAGGCC-GGC--GCCGAcacgcGGCg -3'
miRNA:   3'- aaCUGCUCCGGuUCGauCGGCU-----CCGg -5'
5628 5' -58.1 NC_001806.1 + 126065 0.66 0.804803
Target:  5'- gUGAUGuucGGgCGGGUgaacgAGCCGAcGGCCc -3'
miRNA:   3'- aACUGCu--CCgGUUCGa----UCGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 120094 0.67 0.726604
Target:  5'- cUGGCGugccuccgggcccuGGGCCAGGCcauCCG-GGCCg -3'
miRNA:   3'- aACUGC--------------UCCGGUUCGaucGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 119903 0.7 0.58761
Target:  5'- -cGGCGcuGGCCAcGGCccuGaCCGAGGCCu -3'
miRNA:   3'- aaCUGCu-CCGGU-UCGau-C-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 119755 0.68 0.689622
Target:  5'- -cGGCGAcGGCCGGaCUGGCUGuGGaGCCg -3'
miRNA:   3'- aaCUGCU-CCGGUUcGAUCGGC-UC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 119591 0.66 0.777517
Target:  5'- cUGGCG-GGUCugGAGCcccccGGCgGGGGCCg -3'
miRNA:   3'- aACUGCuCCGG--UUCGa----UCGgCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 113873 0.66 0.804803
Target:  5'- --cGCGAcuGCCGGGUUAGCgCGggGGGCCa -3'
miRNA:   3'- aacUGCUc-CGGUUCGAUCG-GC--UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 112328 0.69 0.607994
Target:  5'- -aGGCG-GGCCAccgccgggaGGCc-GUCGAGGCCu -3'
miRNA:   3'- aaCUGCuCCGGU---------UCGauCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 109231 0.66 0.795852
Target:  5'- -cGugG-GGCCGGGCggGGCgGAauccugGGCCc -3'
miRNA:   3'- aaCugCuCCGGUUCGa-UCGgCU------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 109155 0.68 0.679495
Target:  5'- -gGGUGAGGCCAgAGUcGGCgCGGGGCUc -3'
miRNA:   3'- aaCUGCUCCGGU-UCGaUCG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 108895 0.68 0.679495
Target:  5'- gUUGAUGGcaucGGCCAAGacugGGUCGucGGGCCg -3'
miRNA:   3'- -AACUGCU----CCGGUUCga--UCGGC--UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 107464 0.66 0.804803
Target:  5'- -cGACcuccGGaCCGcGCUGGCCcGGGCCg -3'
miRNA:   3'- aaCUGcu--CC-GGUuCGAUCGGcUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.