miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 107020 0.66 0.795852
Target:  5'- --cGCGcuuGCCGGGUUGGCCGcccgcgGGGCCg -3'
miRNA:   3'- aacUGCuc-CGGUUCGAUCGGC------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 104898 0.67 0.758661
Target:  5'- aUGACcccccAGGCCGuGCUGGCguuCGuGGCCc -3'
miRNA:   3'- aACUGc----UCCGGUuCGAUCG---GCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 99647 0.69 0.62845
Target:  5'- gUGGCG-GGCCuGGCgggcaggcAGCUGGGGCa -3'
miRNA:   3'- aACUGCuCCGGuUCGa-------UCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 98871 1.08 0.001738
Target:  5'- uUUGACGAGGCCAAGCUAGCCGAGGCCc -3'
miRNA:   3'- -AACUGCUCCGGUUCGAUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 97987 0.66 0.799451
Target:  5'- --aACGAGGCCcgcAAGCUGaaccccaacgccaucGCCucGGCCa -3'
miRNA:   3'- aacUGCUCCGG---UUCGAU---------------CGGcuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 95526 0.66 0.768149
Target:  5'- cUGACGAagcGGUCGuuGGCcAGCCuGGGGCg -3'
miRNA:   3'- aACUGCU---CCGGU--UCGaUCGG-CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 94189 0.75 0.326495
Target:  5'- ---cUGAGGCCGGGCcuggaggcccaGGCCGGGGCCu -3'
miRNA:   3'- aacuGCUCCGGUUCGa----------UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 93469 0.73 0.415383
Target:  5'- -gGACGcGGCCcuggagguGGCgcacgaGGCCGAGGCCc -3'
miRNA:   3'- aaCUGCuCCGGu-------UCGa-----UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 92923 0.75 0.31915
Target:  5'- -gGGCGGGG-CGGGCcuggaGGCCGGGGCCc -3'
miRNA:   3'- aaCUGCUCCgGUUCGa----UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 92459 0.71 0.498201
Target:  5'- --cGCGAGcGCCAAcGCgu-CCGAGGCCg -3'
miRNA:   3'- aacUGCUC-CGGUU-CGaucGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 91156 0.67 0.74906
Target:  5'- cUGuuCGAgGGCCAGGacacGGCCGcGGCCc -3'
miRNA:   3'- aACu-GCU-CCGGUUCga--UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 90295 0.69 0.638685
Target:  5'- -cGGCuuuGAGGCCAAcgUGGCCGuGGUCg -3'
miRNA:   3'- aaCUG---CUCCGGUUcgAUCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 89578 0.67 0.719679
Target:  5'- -cGGCc-GGCCGGGCUuauggaccGCCGGcGGCCg -3'
miRNA:   3'- aaCUGcuCCGGUUCGAu-------CGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 89253 0.67 0.709722
Target:  5'- -aGGCGGGGgucCCcGGCUGGCuccgCGAgGGCCg -3'
miRNA:   3'- aaCUGCUCC---GGuUCGAUCG----GCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 84963 0.68 0.679495
Target:  5'- --cACGAGcGCCAGcGCUA-UCGGGGCCu -3'
miRNA:   3'- aacUGCUC-CGGUU-CGAUcGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 84584 0.69 0.616171
Target:  5'- -cGACGAgcugcugcuccacaaGGCCAAGCUGGCCugcgggaacgaguucGAGGg- -3'
miRNA:   3'- aaCUGCU---------------CCGGUUCGAUCGG---------------CUCCgg -5'
5628 5' -58.1 NC_001806.1 + 84440 0.67 0.709722
Target:  5'- -gGACgGGGGCCGGuuugugagccuGCUucgggccgcggGGcCCGAGGCCa -3'
miRNA:   3'- aaCUG-CUCCGGUU-----------CGA-----------UC-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 84073 0.67 0.719679
Target:  5'- -aGuCGGGGCCccAGCUGcgcgcugccGCgGAGGCCc -3'
miRNA:   3'- aaCuGCUCCGGu-UCGAU---------CGgCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 77537 0.68 0.689622
Target:  5'- ---cCGGGGCCccuGGUgcuGCgCGAGGCCa -3'
miRNA:   3'- aacuGCUCCGGu--UCGau-CG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 77506 0.73 0.388864
Target:  5'- -gGGCGAGGCguaccugCGAGUgAGCgGAGGCCc -3'
miRNA:   3'- aaCUGCUCCG-------GUUCGaUCGgCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.