miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 77121 0.79 0.17447
Target:  5'- ----aGAGcGCCGAGCgGGCCGGGGCCg -3'
miRNA:   3'- aacugCUC-CGGUUCGaUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 76894 0.73 0.418884
Target:  5'- -cGuCGAGGCCcugcggaggucucucGAGgaGGCCGAGGCg -3'
miRNA:   3'- aaCuGCUCCGG---------------UUCgaUCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 76815 0.66 0.777517
Target:  5'- --aGCGcGGCCAgcGGCgacGGCCcGGGCCu -3'
miRNA:   3'- aacUGCuCCGGU--UCGa--UCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 76581 0.76 0.264862
Target:  5'- --cGCGAGcGCCGGGCccAGCuCGAGGCCg -3'
miRNA:   3'- aacUGCUC-CGGUUCGa-UCG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 76047 0.66 0.777517
Target:  5'- cUGGCGcGGCUucugcGGCUGGCgggGGGGCUg -3'
miRNA:   3'- aACUGCuCCGGu----UCGAUCGg--CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 75769 0.69 0.62845
Target:  5'- uUUGACGuGGUCGAGCU--CCGucGCCu -3'
miRNA:   3'- -AACUGCuCCGGUUCGAucGGCucCGG- -5'
5628 5' -58.1 NC_001806.1 + 75729 0.7 0.58761
Target:  5'- -cGugGAGGCCGuGCUGGaCCGcguggaaagcGGuGCCg -3'
miRNA:   3'- aaCugCUCCGGUuCGAUC-GGC----------UC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 74872 0.69 0.617194
Target:  5'- cUGGCGAcccugcgGGCCucccugccggcGGGCUGGucggaccuccCCGAGGCCg -3'
miRNA:   3'- aACUGCU-------CCGG-----------UUCGAUC----------GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 74599 0.71 0.479117
Target:  5'- -cGACGAcGG-CGGGCUGucGCCaGAGGCCa -3'
miRNA:   3'- aaCUGCU-CCgGUUCGAU--CGG-CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 74340 0.69 0.597789
Target:  5'- --aGCGGGGCCAGacGCUGGacgcccCCGAGGaCCu -3'
miRNA:   3'- aacUGCUCCGGUU--CGAUC------GGCUCC-GG- -5'
5628 5' -58.1 NC_001806.1 + 73444 0.74 0.340794
Target:  5'- -gGACGcacacccAGGCCGGGgUGGCCGGcccGGCCg -3'
miRNA:   3'- aaCUGC-------UCCGGUUCgAUCGGCU---CCGG- -5'
5628 5' -58.1 NC_001806.1 + 73109 0.69 0.607994
Target:  5'- -cGACccGGCCGGGCcgccggucGCCGAGGCg -3'
miRNA:   3'- aaCUGcuCCGGUUCGau------CGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 70680 0.67 0.719679
Target:  5'- -cGcACGAGGaCAAcguGCUGGCCGuGGUCc -3'
miRNA:   3'- aaC-UGCUCCgGUU---CGAUCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 70507 0.67 0.74906
Target:  5'- -cGACcgccuGGGGCCcuGGCcccCCGAGGCCa -3'
miRNA:   3'- aaCUG-----CUCCGGu-UCGaucGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 68275 0.66 0.777517
Target:  5'- cUGGCcacGGCCAAGCUGcgcGCCGccauGGCg -3'
miRNA:   3'- aACUGcu-CCGGUUCGAU---CGGCu---CCGg -5'
5628 5' -58.1 NC_001806.1 + 67217 0.68 0.689622
Target:  5'- cUGGCGGGGCgc-GCUGGU--GGGCCa -3'
miRNA:   3'- aACUGCUCCGguuCGAUCGgcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 66804 0.7 0.586594
Target:  5'- -gGAgGAucacGGCCGAGCggGGCCGGcccggguGGCCg -3'
miRNA:   3'- aaCUgCU----CCGGUUCGa-UCGGCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 65636 0.67 0.718686
Target:  5'- -gGGCGAgaggggccccggcGGCCucccccuggguGGCUGcGCUGGGGCCg -3'
miRNA:   3'- aaCUGCU-------------CCGGu----------UCGAU-CGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 61544 0.66 0.795852
Target:  5'- -gGGCgGGGGCUuGGCgugcccGCCGAGGUa -3'
miRNA:   3'- aaCUG-CUCCGGuUCGau----CGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 59118 0.71 0.476285
Target:  5'- gUGACGAGG-UggGCUucgguggugagggcAGCCG-GGCCg -3'
miRNA:   3'- aACUGCUCCgGuuCGA--------------UCGGCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.