Results 81 - 100 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 58068 | 0.68 | 0.679495 |
Target: 5'- -aGGCccggGAGGCCGAGCUcccGGCUGAaggagaccccuGGCUa -3' miRNA: 3'- aaCUG----CUCCGGUUCGA---UCGGCU-----------CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 57032 | 0.76 | 0.284293 |
Target: 5'- cUGG-GuGGCCGGGCccggGGCCGGGGCCc -3' miRNA: 3'- aACUgCuCCGGUUCGa---UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 56508 | 0.67 | 0.739357 |
Target: 5'- ---cUGGGGCCAcagcGGCaGGCCcGGGCCc -3' miRNA: 3'- aacuGCUCCGGU----UCGaUCGGcUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 54080 | 0.67 | 0.748094 |
Target: 5'- -cGACGccaacccAGGCCGcGGCggggAGCCGAGcCCg -3' miRNA: 3'- aaCUGC-------UCCGGU-UCGa---UCGGCUCcGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 54016 | 0.68 | 0.689622 |
Target: 5'- --cACGAGGCCc-GCgagGGCaCGAGGaCCa -3' miRNA: 3'- aacUGCUCCGGuuCGa--UCG-GCUCC-GG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 51795 | 0.67 | 0.709722 |
Target: 5'- -cGugGcGGCCAAGUacGCCGccaccguGGCCg -3' miRNA: 3'- aaCugCuCCGGUUCGauCGGCu------CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 51597 | 0.77 | 0.246521 |
Target: 5'- -gGGCGAGGUgGAGCUGcCCGGcGGCCa -3' miRNA: 3'- aaCUGCUCCGgUUCGAUcGGCU-CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 50511 | 0.72 | 0.424171 |
Target: 5'- -cGugGGGGCCGAGCa---CGAGGCg -3' miRNA: 3'- aaCugCUCCGGUUCGaucgGCUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 42000 | 0.67 | 0.739357 |
Target: 5'- -gGGCGAGGgcugcuCCGuGCUGGCCGcgggguugGGGUCg -3' miRNA: 3'- aaCUGCUCC------GGUuCGAUCGGC--------UCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 39537 | 0.71 | 0.527439 |
Target: 5'- -cGAUGcGGCCugcguAGUucaagagguaggUGGCCGGGGCCa -3' miRNA: 3'- aaCUGCuCCGGu----UCG------------AUCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 38489 | 0.68 | 0.679495 |
Target: 5'- aUGACcGGGCUGucGGCUGccGUCGGGGCUg -3' miRNA: 3'- aACUGcUCCGGU--UCGAU--CGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 38228 | 0.69 | 0.638685 |
Target: 5'- -gGACGAGGCgucuggguGCUGgguacGCCGGGGUCu -3' miRNA: 3'- aaCUGCUCCGguu-----CGAU-----CGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 37768 | 0.71 | 0.517618 |
Target: 5'- -cGGCGGGcGCCuuucGCUccggGGCCGGGGCg -3' miRNA: 3'- aaCUGCUC-CGGuu--CGA----UCGGCUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 37317 | 0.69 | 0.607994 |
Target: 5'- gUGGCGAGGUUAuccAGCacAGCCGcGGUCg -3' miRNA: 3'- aACUGCUCCGGU---UCGa-UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 36665 | 0.7 | 0.557293 |
Target: 5'- -aGGgGGGGCCAcgugGGUUAuGuCCGGGGCCc -3' miRNA: 3'- aaCUgCUCCGGU----UCGAU-C-GGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 34402 | 0.8 | 0.157629 |
Target: 5'- -cGGCGGuGGCCGGGCcgGGCCG-GGCCg -3' miRNA: 3'- aaCUGCU-CCGGUUCGa-UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 33661 | 0.69 | 0.597789 |
Target: 5'- gUGuCGcGGGCCGucuGCUGGcCCGcGGCCa -3' miRNA: 3'- aACuGC-UCCGGUu--CGAUC-GGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 33120 | 0.69 | 0.648916 |
Target: 5'- -gGACGGGGCCcGGaccGCCGcGGUCg -3' miRNA: 3'- aaCUGCUCCGGuUCgauCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 32963 | 0.71 | 0.517618 |
Target: 5'- -gGGcCGGGGCCccuuGGGUccGCCGGGGCCc -3' miRNA: 3'- aaCU-GCUCCGG----UUCGauCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 32681 | 0.67 | 0.758661 |
Target: 5'- gUGGCGuGGCCGAcCuUAGCCucuGGGGCg -3' miRNA: 3'- aACUGCuCCGGUUcG-AUCGG---CUCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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