miRNA display CGI


Results 101 - 120 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 30416 0.67 0.719679
Target:  5'- -cGGgGGGGCCGGGCguggagggugGGCaCG-GGCCc -3'
miRNA:   3'- aaCUgCUCCGGUUCGa---------UCG-GCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 30022 0.71 0.498201
Target:  5'- gUUGAagcgGAGGCgGGGC-GGCCGAggGGCCg -3'
miRNA:   3'- -AACUg---CUCCGgUUCGaUCGGCU--CCGG- -5'
5628 5' -58.1 NC_001806.1 + 29683 0.68 0.699701
Target:  5'- -gGGCGAGGaaaGGGCgGGCCGGGGa- -3'
miRNA:   3'- aaCUGCUCCgg-UUCGaUCGGCUCCgg -5'
5628 5' -58.1 NC_001806.1 + 29435 0.7 0.57645
Target:  5'- -aGACccgcaugGAGGCCGAGgaGGCCGucaGGGCg -3'
miRNA:   3'- aaCUG-------CUCCGGUUCgaUCGGC---UCCGg -5'
5628 5' -58.1 NC_001806.1 + 29099 0.69 0.648916
Target:  5'- -aGACGGGGCU--GCUggGGCCGcaGGGCg -3'
miRNA:   3'- aaCUGCUCCGGuuCGA--UCGGC--UCCGg -5'
5628 5' -58.1 NC_001806.1 + 28175 0.66 0.795852
Target:  5'- --cGCGAGGUgAGG--GGCCGGGcGCCa -3'
miRNA:   3'- aacUGCUCCGgUUCgaUCGGCUC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 27940 0.69 0.648916
Target:  5'- -aGGCGGGGguaUAAGUUAGCCcuGGCCc -3'
miRNA:   3'- aaCUGCUCCg--GUUCGAUCGGcuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 27826 0.66 0.813597
Target:  5'- uUUGGgGGcGCCGGGUUGGUccccggggaCGGGGCCg -3'
miRNA:   3'- -AACUgCUcCGGUUCGAUCG---------GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 27295 0.67 0.706722
Target:  5'- -cGGCGGGGCCcGGCcaaccAGCguccgccgagucuuCGGGGCCc -3'
miRNA:   3'- aaCUGCUCCGGuUCGa----UCG--------------GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 27028 0.71 0.527439
Target:  5'- gUGGCgGAGGCCgAGGCggucaucgGGCCGugccugGGGCCc -3'
miRNA:   3'- aACUG-CUCCGG-UUCGa-------UCGGC------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 25632 0.68 0.689622
Target:  5'- -gGGCuGGGGCUggGgagGGCUGGGGCUg -3'
miRNA:   3'- aaCUG-CUCCGGuuCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 25600 0.76 0.264862
Target:  5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3'
miRNA:   3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 25568 0.76 0.264862
Target:  5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3'
miRNA:   3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 25536 0.76 0.264862
Target:  5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3'
miRNA:   3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 24876 0.66 0.795852
Target:  5'- -cGGCgGGGGCCGuggagguGCUgggGGCgGAGGCg -3'
miRNA:   3'- aaCUG-CUCCGGUu------CGA---UCGgCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 24002 0.69 0.597789
Target:  5'- cUGGCGGcccuGGCCAaccGGCUgugcgGGCCGGacacGGCCg -3'
miRNA:   3'- aACUGCU----CCGGU---UCGA-----UCGGCU----CCGG- -5'
5628 5' -58.1 NC_001806.1 + 23924 0.72 0.460399
Target:  5'- -gGGCGAGGaCCuGGCcGGCggCGGGGCCu -3'
miRNA:   3'- aaCUGCUCC-GGuUCGaUCG--GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 23046 0.67 0.758661
Target:  5'- cUGcGCGuGGCCGgcGGC-AG-CGAGGCCg -3'
miRNA:   3'- aAC-UGCuCCGGU--UCGaUCgGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22863 0.81 0.12179
Target:  5'- -cGGCGAccuggcGGCCGucccggGGCUGGCCGGGGCCc -3'
miRNA:   3'- aaCUGCU------CCGGU------UCGAUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22767 0.71 0.479117
Target:  5'- -cGACGAcGCCGGGCgccgcGCCcAGGCCg -3'
miRNA:   3'- aaCUGCUcCGGUUCGau---CGGcUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.