miRNA display CGI


Results 121 - 140 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 146176 0.68 0.659134
Target:  5'- -gGAuCGGuGGUCAGGC-AGCCcGGGCCg -3'
miRNA:   3'- aaCU-GCU-CCGGUUCGaUCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 143110 0.68 0.659134
Target:  5'- -cGACGcuggGGGCguGGCU-GCCGggagGGGCCg -3'
miRNA:   3'- aaCUGC----UCCGguUCGAuCGGC----UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 73109 0.69 0.607994
Target:  5'- -cGACccGGCCGGGCcgccggucGCCGAGGCg -3'
miRNA:   3'- aaCUGcuCCGGUUCGau------CGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 112328 0.69 0.607994
Target:  5'- -aGGCG-GGCCAccgccgggaGGCc-GUCGAGGCCu -3'
miRNA:   3'- aaCUGCuCCGGU---------UCGauCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 37317 0.69 0.607994
Target:  5'- gUGGCGAGGUUAuccAGCacAGCCGcGGUCg -3'
miRNA:   3'- aACUGCUCCGGU---UCGa-UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 37768 0.71 0.517618
Target:  5'- -cGGCGGGcGCCuuucGCUccggGGCCGGGGCg -3'
miRNA:   3'- aaCUGCUC-CGGuu--CGA----UCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 128420 0.71 0.526454
Target:  5'- -gGACGuaaaccagguGGGCC-AGCUGGCUGAugcgaugGGCCa -3'
miRNA:   3'- aaCUGC----------UCCGGuUCGAUCGGCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 27028 0.71 0.527439
Target:  5'- gUGGCgGAGGCCgAGGCggucaucgGGCCGugccugGGGCCc -3'
miRNA:   3'- aACUG-CUCCGG-UUCGa-------UCGGC------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 39537 0.71 0.527439
Target:  5'- -cGAUGcGGCCugcguAGUucaagagguaggUGGCCGGGGCCa -3'
miRNA:   3'- aaCUGCuCCGGu----UCG------------AUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 36665 0.7 0.557293
Target:  5'- -aGGgGGGGCCAcgugGGUUAuGuCCGGGGCCc -3'
miRNA:   3'- aaCUgCUCCGGU----UCGAU-C-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 2812 0.7 0.557293
Target:  5'- -gGGCGGGGgCGGGCUcgGGCCccgGGGGCg -3'
miRNA:   3'- aaCUGCUCCgGUUCGA--UCGG---CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 29435 0.7 0.57645
Target:  5'- -aGACccgcaugGAGGCCGAGgaGGCCGucaGGGCg -3'
miRNA:   3'- aaCUG-------CUCCGGUUCgaUCGGC---UCCGg -5'
5628 5' -58.1 NC_001806.1 + 147241 0.7 0.577463
Target:  5'- -gGuCGGGGCCGAGgaGGaaGAGGCa -3'
miRNA:   3'- aaCuGCUCCGGUUCgaUCggCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 66804 0.7 0.586594
Target:  5'- -gGAgGAucacGGCCGAGCggGGCCGGcccggguGGCCg -3'
miRNA:   3'- aaCUgCU----CCGGUUCGa-UCGGCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 75729 0.7 0.58761
Target:  5'- -cGugGAGGCCGuGCUGGaCCGcguggaaagcGGuGCCg -3'
miRNA:   3'- aaCugCUCCGGUuCGAUC-GGC----------UC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 119903 0.7 0.58761
Target:  5'- -cGGCGcuGGCCAcGGCccuGaCCGAGGCCu -3'
miRNA:   3'- aaCUGCu-CCGGU-UCGau-C-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 2521 0.7 0.591679
Target:  5'- -cGGCGGGGgCGGGCccGGCgcaccgcgcggcgauCGAGGCCa -3'
miRNA:   3'- aaCUGCUCCgGUUCGa-UCG---------------GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 24002 0.69 0.597789
Target:  5'- cUGGCGGcccuGGCCAaccGGCUgugcgGGCCGGacacGGCCg -3'
miRNA:   3'- aACUGCU----CCGGU---UCGA-----UCGGCU----CCGG- -5'
5628 5' -58.1 NC_001806.1 + 74340 0.69 0.597789
Target:  5'- --aGCGGGGCCAGacGCUGGacgcccCCGAGGaCCu -3'
miRNA:   3'- aacUGCUCCGGUU--CGAUC------GGCUCC-GG- -5'
5628 5' -58.1 NC_001806.1 + 33661 0.69 0.597789
Target:  5'- gUGuCGcGGGCCGucuGCUGGcCCGcGGCCa -3'
miRNA:   3'- aACuGC-UCCGGUu--CGAUC-GGCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.