Results 21 - 40 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 151449 | 0.66 | 0.795852 |
Target: 5'- -gGGCGGcGGCgGGGC-GGCCGcGGGCg -3' miRNA: 3'- aaCUGCU-CCGgUUCGaUCGGC-UCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 132904 | 0.66 | 0.789499 |
Target: 5'- cUGGCGGcccuGGCCGaccucggggggagcgGGCUGGCgGAcccccacGGCCg -3' miRNA: 3'- aACUGCU----CCGGU---------------UCGAUCGgCU-------CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 21465 | 0.66 | 0.786754 |
Target: 5'- aUGACGGGGaCGAGUacgacgacgcAGCCGAcGCCg -3' miRNA: 3'- aACUGCUCCgGUUCGa---------UCGGCUcCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 150492 | 0.66 | 0.786754 |
Target: 5'- --aGCG-GGaaGGGC-GGCCGGGGCCg -3' miRNA: 3'- aacUGCuCCggUUCGaUCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 151322 | 0.66 | 0.786754 |
Target: 5'- cUGGCGccGGCuCGGGCggggGGCUGuccGGCCa -3' miRNA: 3'- aACUGCu-CCG-GUUCGa---UCGGCu--CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 2662 | 0.66 | 0.786754 |
Target: 5'- -gGGCGGcGGCCGcgGGCgccGCCGuguGGCUg -3' miRNA: 3'- aaCUGCU-CCGGU--UCGau-CGGCu--CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 21976 | 0.66 | 0.777517 |
Target: 5'- -cGGCG-GGUCGAGCUGgacGCCGAcGCg -3' miRNA: 3'- aaCUGCuCCGGUUCGAU---CGGCUcCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 146069 | 0.66 | 0.777517 |
Target: 5'- -cGGCcaGAGGCCAGGUcAGUCcGGGCg -3' miRNA: 3'- aaCUG--CUCCGGUUCGaUCGGcUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 2855 | 0.66 | 0.777517 |
Target: 5'- -gGGCGcggggagggGGGCgCGGGCguccgAGCCGGGGgCg -3' miRNA: 3'- aaCUGC---------UCCG-GUUCGa----UCGGCUCCgG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 10394 | 0.66 | 0.777517 |
Target: 5'- -gGGCGGGGggAGGCgggAGCCGGGGg- -3' miRNA: 3'- aaCUGCUCCggUUCGa--UCGGCUCCgg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 76815 | 0.66 | 0.777517 |
Target: 5'- --aGCGcGGCCAgcGGCgacGGCCcGGGCCu -3' miRNA: 3'- aacUGCuCCGGU--UCGa--UCGGcUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 68275 | 0.66 | 0.777517 |
Target: 5'- cUGGCcacGGCCAAGCUGcgcGCCGccauGGCg -3' miRNA: 3'- aACUGcu-CCGGUUCGAU---CGGCu---CCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 119591 | 0.66 | 0.777517 |
Target: 5'- cUGGCG-GGUCugGAGCcccccGGCgGGGGCCg -3' miRNA: 3'- aACUGCuCCGG--UUCGa----UCGgCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 76047 | 0.66 | 0.777517 |
Target: 5'- cUGGCGcGGCUucugcGGCUGGCgggGGGGCUg -3' miRNA: 3'- aACUGCuCCGGu----UCGAUCGg--CUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 95526 | 0.66 | 0.768149 |
Target: 5'- cUGACGAagcGGUCGuuGGCcAGCCuGGGGCg -3' miRNA: 3'- aACUGCU---CCGGU--UCGaUCGG-CUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 1898 | 0.66 | 0.768149 |
Target: 5'- -aGACccccGGGCCGAacacGC-GGcCCGAGGCCa -3' miRNA: 3'- aaCUGc---UCCGGUU----CGaUC-GGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 138421 | 0.66 | 0.768149 |
Target: 5'- --uGCGAGGUgCAcagcaaacagcAGCUGGUCGuGGCCc -3' miRNA: 3'- aacUGCUCCG-GU-----------UCGAUCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 23046 | 0.67 | 0.758661 |
Target: 5'- cUGcGCGuGGCCGgcGGC-AG-CGAGGCCg -3' miRNA: 3'- aAC-UGCuCCGGU--UCGaUCgGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 32681 | 0.67 | 0.758661 |
Target: 5'- gUGGCGuGGCCGAcCuUAGCCucuGGGGCg -3' miRNA: 3'- aACUGCuCCGGUUcG-AUCGG---CUCCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 104898 | 0.67 | 0.758661 |
Target: 5'- aUGACcccccAGGCCGuGCUGGCguuCGuGGCCc -3' miRNA: 3'- aACUGc----UCCGGUuCGAUCG---GCuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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