miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5629 3' -55.7 NC_001806.1 + 91519 0.66 0.932396
Target:  5'- -uACCUggaGCGCUgcgacggCGCCGugAUCGuCGg -3'
miRNA:   3'- gcUGGA---CGCGAa------GCGGCugUAGCuGU- -5'
5629 3' -55.7 NC_001806.1 + 20101 0.66 0.927231
Target:  5'- uGGCCgGCGCcgUCuGCgGGCGUCGGu- -3'
miRNA:   3'- gCUGGaCGCGa-AG-CGgCUGUAGCUgu -5'
5629 3' -55.7 NC_001806.1 + 15917 0.66 0.927231
Target:  5'- aGACCgGCGCUccaaaUGUCGACgGUCGugGu -3'
miRNA:   3'- gCUGGaCGCGAa----GCGGCUG-UAGCugU- -5'
5629 3' -55.7 NC_001806.1 + 52863 0.66 0.927231
Target:  5'- gGACCcgacagGCGac-CGCCGGCggCGACGu -3'
miRNA:   3'- gCUGGa-----CGCgaaGCGGCUGuaGCUGU- -5'
5629 3' -55.7 NC_001806.1 + 44618 0.66 0.921829
Target:  5'- -aACCgGCGUcagcUCGCCGGCAUaGACGa -3'
miRNA:   3'- gcUGGaCGCGa---AGCGGCUGUAgCUGU- -5'
5629 3' -55.7 NC_001806.1 + 89581 0.66 0.91619
Target:  5'- cCGGCC-GgGCUUauggacCGCCGGCGgcCGACAg -3'
miRNA:   3'- -GCUGGaCgCGAA------GCGGCUGUa-GCUGU- -5'
5629 3' -55.7 NC_001806.1 + 89899 0.66 0.91619
Target:  5'- gGACCccGCGUUgccggcCGCCGGgguuCAUCGGCGa -3'
miRNA:   3'- gCUGGa-CGCGAa-----GCGGCU----GUAGCUGU- -5'
5629 3' -55.7 NC_001806.1 + 88679 0.66 0.91619
Target:  5'- gCGGCCaUGCGC-UCGCagaGAUcUCGugGg -3'
miRNA:   3'- -GCUGG-ACGCGaAGCGg--CUGuAGCugU- -5'
5629 3' -55.7 NC_001806.1 + 24775 0.66 0.910315
Target:  5'- gGugCUGCGCggCGaCGACGaCGGCc -3'
miRNA:   3'- gCugGACGCGaaGCgGCUGUaGCUGu -5'
5629 3' -55.7 NC_001806.1 + 24121 0.66 0.904206
Target:  5'- gGACCUgGC-CUUCGCCGGgGcCGugGa -3'
miRNA:   3'- gCUGGA-CGcGAAGCGGCUgUaGCugU- -5'
5629 3' -55.7 NC_001806.1 + 5328 0.66 0.902956
Target:  5'- aCGGCCgaucccccucccGCGCUUCGUCcGCGuaUCGGCGu -3'
miRNA:   3'- -GCUGGa-----------CGCGAAGCGGcUGU--AGCUGU- -5'
5629 3' -55.7 NC_001806.1 + 105035 0.67 0.897865
Target:  5'- uGACCUG-GCUaUGCUGGCcgCGAUu -3'
miRNA:   3'- gCUGGACgCGAaGCGGCUGuaGCUGu -5'
5629 3' -55.7 NC_001806.1 + 64900 0.67 0.891294
Target:  5'- aGACCaGCGCcg-GCCucuGGCGUCGGCGc -3'
miRNA:   3'- gCUGGaCGCGaagCGG---CUGUAGCUGU- -5'
5629 3' -55.7 NC_001806.1 + 108866 0.67 0.887244
Target:  5'- cCGGCCgccaGCGCgUCGCgaaacagcccguugaUGGCAUCGGCc -3'
miRNA:   3'- -GCUGGa---CGCGaAGCG---------------GCUGUAGCUGu -5'
5629 3' -55.7 NC_001806.1 + 130199 0.67 0.877481
Target:  5'- gGGCgCUGUGacgCGUCGGCAUgCGACAc -3'
miRNA:   3'- gCUG-GACGCgaaGCGGCUGUA-GCUGU- -5'
5629 3' -55.7 NC_001806.1 + 23196 0.67 0.870246
Target:  5'- -aGCCUGCGCccccUGCUGGCggCGGCGg -3'
miRNA:   3'- gcUGGACGCGaa--GCGGCUGuaGCUGU- -5'
5629 3' -55.7 NC_001806.1 + 103084 0.67 0.870246
Target:  5'- uCGAUCggGCGUaaccggCGCuCGAUAUCGACGg -3'
miRNA:   3'- -GCUGGa-CGCGaa----GCG-GCUGUAGCUGU- -5'
5629 3' -55.7 NC_001806.1 + 35583 0.67 0.870246
Target:  5'- aCGACgUGCGCagCGCCGGaguuUUGGCc -3'
miRNA:   3'- -GCUGgACGCGaaGCGGCUgu--AGCUGu -5'
5629 3' -55.7 NC_001806.1 + 4921 0.68 0.862799
Target:  5'- gCGuCCccgGCGUccUCGCCGGCGUCGGu- -3'
miRNA:   3'- -GCuGGa--CGCGa-AGCGGCUGUAGCUgu -5'
5629 3' -55.7 NC_001806.1 + 94422 0.68 0.862799
Target:  5'- gGAgCUGUGUUUCcuGCaCGACGUCGAgAa -3'
miRNA:   3'- gCUgGACGCGAAG--CG-GCUGUAGCUgU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.