miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5629 5' -58.9 NC_001806.1 + 97616 0.66 0.794223
Target:  5'- gACGCCcgcGACGCCAugGaCCGCa----- -3'
miRNA:   3'- gUGCGG---CUGCGGUugC-GGCGguacaa -5'
5629 5' -58.9 NC_001806.1 + 53771 0.66 0.794223
Target:  5'- -cCGCCGACGCCGucgacgaGCCGCa----- -3'
miRNA:   3'- guGCGGCUGCGGUug-----CGGCGguacaa -5'
5629 5' -58.9 NC_001806.1 + 123023 0.66 0.794223
Target:  5'- -cCGCCGACGCCucguccGCGCCcaccuuaaguuGCCucUGUUu -3'
miRNA:   3'- guGCGGCUGCGGu-----UGCGG-----------CGGu-ACAA- -5'
5629 5' -58.9 NC_001806.1 + 24408 0.66 0.785202
Target:  5'- aCGCGCCGccgcuGCGCCugUGCCGCgGc--- -3'
miRNA:   3'- -GUGCGGC-----UGCGGuuGCGGCGgUacaa -5'
5629 5' -58.9 NC_001806.1 + 109295 0.66 0.785202
Target:  5'- gGCGgaGGCGCCGGCGaaaCGCCAg--- -3'
miRNA:   3'- gUGCggCUGCGGUUGCg--GCGGUacaa -5'
5629 5' -58.9 NC_001806.1 + 76000 0.66 0.785202
Target:  5'- cCGCgGCCGACaCguACGCCGaCAUGUUu -3'
miRNA:   3'- -GUG-CGGCUGcGguUGCGGCgGUACAA- -5'
5629 5' -58.9 NC_001806.1 + 126140 0.66 0.776047
Target:  5'- gGCGgCGAgGCCGGCGCCGaCAc--- -3'
miRNA:   3'- gUGCgGCUgCGGUUGCGGCgGUacaa -5'
5629 5' -58.9 NC_001806.1 + 94866 0.66 0.776047
Target:  5'- gAgGCCGACGCCcugcuggaGGCGCaCGaCGUGUUu -3'
miRNA:   3'- gUgCGGCUGCGG--------UUGCG-GCgGUACAA- -5'
5629 5' -58.9 NC_001806.1 + 129569 0.66 0.776047
Target:  5'- gCAUGUgGugGUCGGCGaguaCGCCAUGc- -3'
miRNA:   3'- -GUGCGgCugCGGUUGCg---GCGGUACaa -5'
5629 5' -58.9 NC_001806.1 + 74250 0.66 0.776047
Target:  5'- aCACGCgGGacauCGCgCAgcGCGCCGCCAUu-- -3'
miRNA:   3'- -GUGCGgCU----GCG-GU--UGCGGCGGUAcaa -5'
5629 5' -58.9 NC_001806.1 + 107839 0.66 0.776047
Target:  5'- gGCGUCGACGuCCGACGCC-CacUGUUc -3'
miRNA:   3'- gUGCGGCUGC-GGUUGCGGcGguACAA- -5'
5629 5' -58.9 NC_001806.1 + 4262 0.66 0.766766
Target:  5'- uCGCGUCGGCGuCCAGCucgacCCGCCggGg- -3'
miRNA:   3'- -GUGCGGCUGC-GGUUGc----GGCGGuaCaa -5'
5629 5' -58.9 NC_001806.1 + 101896 0.66 0.766766
Target:  5'- cCGCGUCGAC-CCGACcgGCCGCCccGc- -3'
miRNA:   3'- -GUGCGGCUGcGGUUG--CGGCGGuaCaa -5'
5629 5' -58.9 NC_001806.1 + 30457 0.66 0.766766
Target:  5'- gGCGCCGcCcccuCCGGCGCCGCCccGc- -3'
miRNA:   3'- gUGCGGCuGc---GGUUGCGGCGGuaCaa -5'
5629 5' -58.9 NC_001806.1 + 22778 0.66 0.766766
Target:  5'- gGCGCCG-CGCCcAgGCCgGCCGcGUg -3'
miRNA:   3'- gUGCGGCuGCGGuUgCGG-CGGUaCAa -5'
5629 5' -58.9 NC_001806.1 + 105002 0.66 0.766766
Target:  5'- cCugGCCaaACGCCAGCGCC-CCGg--- -3'
miRNA:   3'- -GugCGGc-UGCGGUUGCGGcGGUacaa -5'
5629 5' -58.9 NC_001806.1 + 63793 0.66 0.765831
Target:  5'- aCGCGCCggucgGACGCgCGcucucuuuguuguGCGCCGCCAc--- -3'
miRNA:   3'- -GUGCGG-----CUGCG-GU-------------UGCGGCGGUacaa -5'
5629 5' -58.9 NC_001806.1 + 33739 0.66 0.758312
Target:  5'- gCGCGCCGGCucugcggugucggcgGCggcugcggcggcugCGGCgGCCGCCGUGUUc -3'
miRNA:   3'- -GUGCGGCUG---------------CG--------------GUUG-CGGCGGUACAA- -5'
5629 5' -58.9 NC_001806.1 + 148019 0.66 0.757367
Target:  5'- aCugGCgGGaGCCGcCGCCGCCGcugcUGUUg -3'
miRNA:   3'- -GugCGgCUgCGGUuGCGGCGGU----ACAA- -5'
5629 5' -58.9 NC_001806.1 + 94492 0.66 0.757367
Target:  5'- uCGCG-CGGCGCCAcCGCCGCgcUGg- -3'
miRNA:   3'- -GUGCgGCUGCGGUuGCGGCGguACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.