miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5630 3' -66.3 NC_001806.1 + 106242 0.66 0.483256
Target:  5'- --uCCCGGGCCugGGUaacguuuucgGCCGuCCcugACCc -3'
miRNA:   3'- uccGGGCCCGGugCCG----------CGGCuGG---UGG- -5'
5630 3' -66.3 NC_001806.1 + 52347 0.66 0.482374
Target:  5'- cGGGCCgCGGuggacaGCCAgGaGCGUUucugucgGACCACCg -3'
miRNA:   3'- -UCCGG-GCC------CGGUgC-CGCGG-------CUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 118857 0.66 0.474478
Target:  5'- --cCCCGuGGUgCACGGCGUUuGCCGCCu -3'
miRNA:   3'- uccGGGC-CCG-GUGCCGCGGcUGGUGG- -5'
5630 3' -66.3 NC_001806.1 + 90340 0.66 0.474478
Target:  5'- gGGGCUCGGGgguaCCGCGGUGUCccuGAaacugaCGCCc -3'
miRNA:   3'- -UCCGGGCCC----GGUGCCGCGG---CUg-----GUGG- -5'
5630 3' -66.3 NC_001806.1 + 6049 0.66 0.474478
Target:  5'- uGGCgCCGuGCC-CGacuccGCGCCGGCC-CCg -3'
miRNA:   3'- uCCG-GGCcCGGuGC-----CGCGGCUGGuGG- -5'
5630 3' -66.3 NC_001806.1 + 128048 0.66 0.474478
Target:  5'- -uGCCCGuggcGGCCACGGCcCCcaggugggGGcCCACCa -3'
miRNA:   3'- ucCGGGC----CCGGUGCCGcGG--------CU-GGUGG- -5'
5630 3' -66.3 NC_001806.1 + 99931 0.66 0.474478
Target:  5'- uGGUCCcgggagaauggcGGGCCGCGcGCcgggaGUCGACC-CCg -3'
miRNA:   3'- uCCGGG------------CCCGGUGC-CG-----CGGCUGGuGG- -5'
5630 3' -66.3 NC_001806.1 + 126123 0.66 0.474478
Target:  5'- uGGGCCgCGcggacgacggcGGCgAggcCGGCGCCGACaCGCg -3'
miRNA:   3'- -UCCGG-GC-----------CCGgU---GCCGCGGCUG-GUGg -5'
5630 3' -66.3 NC_001806.1 + 121924 0.66 0.474478
Target:  5'- -uGCCCGGGCCGuuGC-CCgGGCCuCCu -3'
miRNA:   3'- ucCGGGCCCGGUgcCGcGG-CUGGuGG- -5'
5630 3' -66.3 NC_001806.1 + 2616 0.66 0.473604
Target:  5'- uGGUCCGugagcucGGCCACGGCGCgCGGggaGCa -3'
miRNA:   3'- uCCGGGC-------CCGGUGCCGCG-GCUgg-UGg -5'
5630 3' -66.3 NC_001806.1 + 66750 0.66 0.469249
Target:  5'- -cGCCCGGGCCccccagccccagcuCGGCGuCCaGGuCCACg -3'
miRNA:   3'- ucCGGGCCCGGu-------------GCCGC-GG-CU-GGUGg -5'
5630 3' -66.3 NC_001806.1 + 34817 0.66 0.46578
Target:  5'- uAGGCCCGcccauCCGCGGCcccucCCGGCaGCCa -3'
miRNA:   3'- -UCCGGGCcc---GGUGCCGc----GGCUGgUGG- -5'
5630 3' -66.3 NC_001806.1 + 147634 0.66 0.46578
Target:  5'- cGaCUgGGGCaCACGGCGCgCGuCCGCg -3'
miRNA:   3'- uCcGGgCCCG-GUGCCGCG-GCuGGUGg -5'
5630 3' -66.3 NC_001806.1 + 133001 0.66 0.46578
Target:  5'- cAGaGCCCuGGGCCGgGGCcGUCuugGAgCGCCu -3'
miRNA:   3'- -UC-CGGG-CCCGGUgCCG-CGG---CUgGUGG- -5'
5630 3' -66.3 NC_001806.1 + 82730 0.66 0.46578
Target:  5'- gGGGUCUgcgGGGCgGCGGCGUCGuCgGgCg -3'
miRNA:   3'- -UCCGGG---CCCGgUGCCGCGGCuGgUgG- -5'
5630 3' -66.3 NC_001806.1 + 20557 0.66 0.46578
Target:  5'- -uGCCaugCGGGgCGgGGCGCgGACCcACCc -3'
miRNA:   3'- ucCGG---GCCCgGUgCCGCGgCUGG-UGG- -5'
5630 3' -66.3 NC_001806.1 + 23225 0.66 0.46578
Target:  5'- cAGcGCaCCGGacGCCGCcgacGCGCUGGCgGCCg -3'
miRNA:   3'- -UC-CG-GGCC--CGGUGc---CGCGGCUGgUGG- -5'
5630 3' -66.3 NC_001806.1 + 37771 0.66 0.46578
Target:  5'- cGGGCgCCuuucgcuccgGGGCCGgGGCGCgGGgguCCGCg -3'
miRNA:   3'- -UCCG-GG----------CCCGGUgCCGCGgCU---GGUGg -5'
5630 3' -66.3 NC_001806.1 + 11876 0.66 0.46578
Target:  5'- -cGCCgGGGCCagacGCGGgGCCGAagACg -3'
miRNA:   3'- ucCGGgCCCGG----UGCCgCGGCUggUGg -5'
5630 3' -66.3 NC_001806.1 + 147525 0.66 0.46578
Target:  5'- aGGGCCCGuGcccacccuccacGCC-CGGCccccccgaGCCGcgcGCCACCg -3'
miRNA:   3'- -UCCGGGC-C------------CGGuGCCG--------CGGC---UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.