miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5630 5' -58 NC_001806.1 + 125986 0.67 0.797364
Target:  5'- -gGGCCCCCAGGguccguguuucUCGCCccaGUGGCUg- -3'
miRNA:   3'- ugCUGGGGGUUCa----------AGUGG---CACCGGac -5'
5630 5' -58 NC_001806.1 + 75413 0.67 0.77931
Target:  5'- cCGACCUugucguCCAGGUgCGCCG-GGCCg- -3'
miRNA:   3'- uGCUGGG------GGUUCAaGUGGCaCCGGac -5'
5630 5' -58 NC_001806.1 + 3649 0.67 0.77931
Target:  5'- gGCGACCCCCucGUcaucugCGCCG-GcGCCg- -3'
miRNA:   3'- -UGCUGGGGGuuCAa-----GUGGCaC-CGGac -5'
5630 5' -58 NC_001806.1 + 59649 0.67 0.770085
Target:  5'- --cACCCCCA---UUGCCGUGGaCCUGu -3'
miRNA:   3'- ugcUGGGGGUucaAGUGGCACC-GGAC- -5'
5630 5' -58 NC_001806.1 + 21138 0.67 0.760741
Target:  5'- cCGGCuCCCCGGGcccCACCGacgGGCCg- -3'
miRNA:   3'- uGCUG-GGGGUUCaa-GUGGCa--CCGGac -5'
5630 5' -58 NC_001806.1 + 102049 0.67 0.760741
Target:  5'- gAUGGCCCCCGAG-UCGgacCCGgaGGCCc- -3'
miRNA:   3'- -UGCUGGGGGUUCaAGU---GGCa-CCGGac -5'
5630 5' -58 NC_001806.1 + 24817 0.67 0.751285
Target:  5'- gGCG-CCgCCCGGGaUUCGCUG-GGCCUc -3'
miRNA:   3'- -UGCuGG-GGGUUC-AAGUGGCaCCGGAc -5'
5630 5' -58 NC_001806.1 + 106458 0.68 0.745562
Target:  5'- -aGAUCCCCAGGUagguacguguauuucUCcCCGUcGGCCUc -3'
miRNA:   3'- ugCUGGGGGUUCA---------------AGuGGCA-CCGGAc -5'
5630 5' -58 NC_001806.1 + 30216 0.68 0.732076
Target:  5'- cGCGcGCCCCCGcGcg-GCCGUGGCCc- -3'
miRNA:   3'- -UGC-UGGGGGUuCaagUGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 99195 0.68 0.72234
Target:  5'- aACu-CCCCCGGGUgu-CCGcGGCCUGu -3'
miRNA:   3'- -UGcuGGGGGUUCAaguGGCaCCGGAC- -5'
5630 5' -58 NC_001806.1 + 81757 0.68 0.72234
Target:  5'- aGCGGCCCCCAGGacgagUC-CCGccGCCa- -3'
miRNA:   3'- -UGCUGGGGGUUCa----AGuGGCacCGGac -5'
5630 5' -58 NC_001806.1 + 74357 0.68 0.712529
Target:  5'- gACG-CCCCCGAGgaC-CUGgcGGCCUGg -3'
miRNA:   3'- -UGCuGGGGGUUCaaGuGGCa-CCGGAC- -5'
5630 5' -58 NC_001806.1 + 70021 0.68 0.70661
Target:  5'- cGCGGCCUaccuuccccgcccggUCGAGUUCGCCcugcguguguUGGCCUGg -3'
miRNA:   3'- -UGCUGGG---------------GGUUCAAGUGGc---------ACCGGAC- -5'
5630 5' -58 NC_001806.1 + 34346 0.68 0.702651
Target:  5'- aACGGCCCCCGGGgaacgggggACCG-GGgCUGg -3'
miRNA:   3'- -UGCUGGGGGUUCaag------UGGCaCCgGAC- -5'
5630 5' -58 NC_001806.1 + 82492 0.69 0.672704
Target:  5'- -aGACCCUCgAAGgcgUCACCuggGUGGCCg- -3'
miRNA:   3'- ugCUGGGGG-UUCa--AGUGG---CACCGGac -5'
5630 5' -58 NC_001806.1 + 9730 0.69 0.666673
Target:  5'- gGCGGCCCCCAucAccgccccuaaccgcaGggCGCCGUGGgUUGg -3'
miRNA:   3'- -UGCUGGGGGU--U---------------CaaGUGGCACCgGAC- -5'
5630 5' -58 NC_001806.1 + 84541 0.69 0.662646
Target:  5'- uUGACCCCUggGUUCugUucGGCCa- -3'
miRNA:   3'- uGCUGGGGGuuCAAGugGcaCCGGac -5'
5630 5' -58 NC_001806.1 + 42396 0.69 0.662646
Target:  5'- cGCGcCCCCCAGa--CGCUG-GGCCUGa -3'
miRNA:   3'- -UGCuGGGGGUUcaaGUGGCaCCGGAC- -5'
5630 5' -58 NC_001806.1 + 1377 0.69 0.641456
Target:  5'- cACGGCCCCCGccgccgccagcacGGUgccgcugCGgcCCGUGGCCg- -3'
miRNA:   3'- -UGCUGGGGGU-------------UCAa------GU--GGCACCGGac -5'
5630 5' -58 NC_001806.1 + 94008 0.7 0.63236
Target:  5'- gAUGGCCgCCCcGGUguccgagccCACCGUGGCCc- -3'
miRNA:   3'- -UGCUGG-GGGuUCAa--------GUGGCACCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.