miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5635 3' -53.7 NC_001806.1 + 68313 0.66 0.972396
Target:  5'- uCUGUugucgggaaCGGCCAucgccccggcAGACGCgcgggacugcUGGCGGcCGCu -3'
miRNA:   3'- -GACA---------GCCGGU----------UUUGCG----------ACUGCCaGCG- -5'
5635 3' -53.7 NC_001806.1 + 88993 0.66 0.971553
Target:  5'- -cG-CGGCCAGaagccgcccgacccGACGCggagGAC-GUCGCg -3'
miRNA:   3'- gaCaGCCGGUU--------------UUGCGa---CUGcCAGCG- -5'
5635 3' -53.7 NC_001806.1 + 10032 0.66 0.969515
Target:  5'- --cUCGGCCGAAcaGCGCgGugGGggGUu -3'
miRNA:   3'- gacAGCCGGUUU--UGCGaCugCCagCG- -5'
5635 3' -53.7 NC_001806.1 + 5366 0.66 0.969515
Target:  5'- -cGUccCGGCgCGgcGAGCGuCUGACGGUCu- -3'
miRNA:   3'- gaCA--GCCG-GU--UUUGC-GACUGCCAGcg -5'
5635 3' -53.7 NC_001806.1 + 37789 0.66 0.969515
Target:  5'- ----gGGCCGGGGCGC-GGgGGUcCGCg -3'
miRNA:   3'- gacagCCGGUUUUGCGaCUgCCA-GCG- -5'
5635 3' -53.7 NC_001806.1 + 132636 0.66 0.969515
Target:  5'- -aGUCGGCaCGGGAC-CUGgugcGCGGggcCGCg -3'
miRNA:   3'- gaCAGCCG-GUUUUGcGAC----UGCCa--GCG- -5'
5635 3' -53.7 NC_001806.1 + 76923 0.66 0.969215
Target:  5'- ----aGGCCGAGGCGgaGugGGacgagguauggggUCGCu -3'
miRNA:   3'- gacagCCGGUUUUGCgaCugCC-------------AGCG- -5'
5635 3' -53.7 NC_001806.1 + 86786 0.66 0.963121
Target:  5'- gCUGUUcgaaGGCCGcccagcgcgcguGGACGUacucGCGGUCGCg -3'
miRNA:   3'- -GACAG----CCGGU------------UUUGCGac--UGCCAGCG- -5'
5635 3' -53.7 NC_001806.1 + 87145 0.66 0.962779
Target:  5'- -cGUCGGCCcucagggAGAGCguGCUGAagcacaGGUUGUg -3'
miRNA:   3'- gaCAGCCGG-------UUUUG--CGACUg-----CCAGCG- -5'
5635 3' -53.7 NC_001806.1 + 91782 0.66 0.959597
Target:  5'- --cUCGGCCcuGAAGCGCgcgGACGGaUC-Cg -3'
miRNA:   3'- gacAGCCGG--UUUUGCGa--CUGCC-AGcG- -5'
5635 3' -53.7 NC_001806.1 + 97434 0.66 0.959597
Target:  5'- aCUGgguGCCAAAGCGCccGuCGGUCuGCa -3'
miRNA:   3'- -GACagcCGGUUUUGCGa-CuGCCAG-CG- -5'
5635 3' -53.7 NC_001806.1 + 137652 0.67 0.955848
Target:  5'- -gGUUGGCCGAgGGCGCccUGacGCGGUUGg -3'
miRNA:   3'- gaCAGCCGGUU-UUGCG--AC--UGCCAGCg -5'
5635 3' -53.7 NC_001806.1 + 77377 0.67 0.955848
Target:  5'- ----aGGCCAGAcggGCGCgggcgcGGCGGcCGCg -3'
miRNA:   3'- gacagCCGGUUU---UGCGa-----CUGCCaGCG- -5'
5635 3' -53.7 NC_001806.1 + 68274 0.67 0.955461
Target:  5'- uCUGgccaCGGCCAAGcuGCGCgccgccaUGGCGG-CGUu -3'
miRNA:   3'- -GACa---GCCGGUUU--UGCG-------ACUGCCaGCG- -5'
5635 3' -53.7 NC_001806.1 + 86394 0.67 0.951869
Target:  5'- --cUCGGCUA--ACGC-GGCGGcCGCu -3'
miRNA:   3'- gacAGCCGGUuuUGCGaCUGCCaGCG- -5'
5635 3' -53.7 NC_001806.1 + 109463 0.67 0.951869
Target:  5'- uUGUgGGCguCAAGugGCUGGCGuGggGCg -3'
miRNA:   3'- gACAgCCG--GUUUugCGACUGC-CagCG- -5'
5635 3' -53.7 NC_001806.1 + 73616 0.67 0.947657
Target:  5'- uCUGaUCGGUCGccuGGCGCUGGCGaa-GCu -3'
miRNA:   3'- -GAC-AGCCGGUu--UUGCGACUGCcagCG- -5'
5635 3' -53.7 NC_001806.1 + 102256 0.67 0.947657
Target:  5'- gUGgcccCGGCUgaGGAACGCggcGGCGG-CGCg -3'
miRNA:   3'- gACa---GCCGG--UUUUGCGa--CUGCCaGCG- -5'
5635 3' -53.7 NC_001806.1 + 95539 0.67 0.946347
Target:  5'- -cGUUGGCCAGccuggGGCGCUGcguccgcgagcagcGCGGggaGCu -3'
miRNA:   3'- gaCAGCCGGUU-----UUGCGAC--------------UGCCag-CG- -5'
5635 3' -53.7 NC_001806.1 + 147684 0.67 0.941361
Target:  5'- -cGggGGCCGGGGCGCgggGGCGGgccccggaggcggCGCu -3'
miRNA:   3'- gaCagCCGGUUUUGCGa--CUGCCa------------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.