miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5635 5' -62.5 NC_001806.1 + 134983 0.66 0.60762
Target:  5'- cGGCGGCcAUCccggUGCccgauGCCCCCGcCCUGg -3'
miRNA:   3'- cCCGCCGaUAG----ACG-----CGGGGGUcGGAU- -5'
5635 5' -62.5 NC_001806.1 + 20311 0.66 0.60762
Target:  5'- gGGGCGGUcc----CGCCCgCCGGCCa- -3'
miRNA:   3'- -CCCGCCGauagacGCGGG-GGUCGGau -5'
5635 5' -62.5 NC_001806.1 + 2674 0.66 0.597712
Target:  5'- cGGGCgccgccguguGGCUGggccccgggggCUGcCGCCgCCAGCCg- -3'
miRNA:   3'- -CCCG----------CCGAUa----------GAC-GCGGgGGUCGGau -5'
5635 5' -62.5 NC_001806.1 + 67443 0.66 0.597712
Target:  5'- aGGgGGCgcGUCUGUGCCgUCCAGgCCa- -3'
miRNA:   3'- cCCgCCGa-UAGACGCGG-GGGUC-GGau -5'
5635 5' -62.5 NC_001806.1 + 20339 0.66 0.597712
Target:  5'- gGGGCGGCaaggCggGCGgCCCUugGGCCg- -3'
miRNA:   3'- -CCCGCCGaua-Ga-CGCgGGGG--UCGGau -5'
5635 5' -62.5 NC_001806.1 + 69593 0.66 0.587826
Target:  5'- cGGGCGGC--UCUGCGaggcggUCGGCCUGu -3'
miRNA:   3'- -CCCGCCGauAGACGCggg---GGUCGGAU- -5'
5635 5' -62.5 NC_001806.1 + 23361 0.66 0.587826
Target:  5'- -aGCGGCg--CgGaCGCCCCCGGCUc- -3'
miRNA:   3'- ccCGCCGauaGaC-GCGGGGGUCGGau -5'
5635 5' -62.5 NC_001806.1 + 103750 0.66 0.581909
Target:  5'- cGGGCGGgUcgC-GCGCCCCagagugugaccuuuuCGGUCUGc -3'
miRNA:   3'- -CCCGCCgAuaGaCGCGGGG---------------GUCGGAU- -5'
5635 5' -62.5 NC_001806.1 + 78389 0.66 0.577972
Target:  5'- uGGCGGCgGUgaGCGUCCUCGGgCg- -3'
miRNA:   3'- cCCGCCGaUAgaCGCGGGGGUCgGau -5'
5635 5' -62.5 NC_001806.1 + 69415 0.66 0.577972
Target:  5'- uGGCGGCgggcGUCcccgcgcgGaCGCCCaCCGGCCa- -3'
miRNA:   3'- cCCGCCGa---UAGa-------C-GCGGG-GGUCGGau -5'
5635 5' -62.5 NC_001806.1 + 5675 0.66 0.577972
Target:  5'- aGGGCGGgUggGUCcGCGCCCC--GCCc- -3'
miRNA:   3'- -CCCGCCgA--UAGaCGCGGGGguCGGau -5'
5635 5' -62.5 NC_001806.1 + 43586 0.66 0.577972
Target:  5'- gGGGCGGCUgacaaGUCcGCGgaugugcucguCUCCCAGgCUAu -3'
miRNA:   3'- -CCCGCCGA-----UAGaCGC-----------GGGGGUCgGAU- -5'
5635 5' -62.5 NC_001806.1 + 74817 0.66 0.577972
Target:  5'- aGGgGGUc--CUGCGCCCCCucCCUGa -3'
miRNA:   3'- cCCgCCGauaGACGCGGGGGucGGAU- -5'
5635 5' -62.5 NC_001806.1 + 147889 0.66 0.568153
Target:  5'- aGGGgGGCggGUCUGUugacaaggggGCCCguCCGGCCc- -3'
miRNA:   3'- -CCCgCCGa-UAGACG----------CGGG--GGUCGGau -5'
5635 5' -62.5 NC_001806.1 + 131354 0.66 0.568153
Target:  5'- aGGCGGCg--CUGUcggaGCUCCCcaccgaGGCCUGg -3'
miRNA:   3'- cCCGCCGauaGACG----CGGGGG------UCGGAU- -5'
5635 5' -62.5 NC_001806.1 + 100780 0.66 0.568153
Target:  5'- cGGCGGCcaGUCgccGCGCCCCUcGCg-- -3'
miRNA:   3'- cCCGCCGa-UAGa--CGCGGGGGuCGgau -5'
5635 5' -62.5 NC_001806.1 + 104787 0.66 0.558378
Target:  5'- gGGGaGGCUGggagcucacaUGCcccGCCCCCGGCCc- -3'
miRNA:   3'- -CCCgCCGAUag--------ACG---CGGGGGUCGGau -5'
5635 5' -62.5 NC_001806.1 + 120339 0.66 0.558378
Target:  5'- gGGGCGGCggGUCgucccgcucgGCGacgacCUCCCGGCCc- -3'
miRNA:   3'- -CCCGCCGa-UAGa---------CGC-----GGGGGUCGGau -5'
5635 5' -62.5 NC_001806.1 + 79142 0.67 0.54865
Target:  5'- cGGGCGGCcGUUcGaCGCCUCCcuCCUGu -3'
miRNA:   3'- -CCCGCCGaUAGaC-GCGGGGGucGGAU- -5'
5635 5' -62.5 NC_001806.1 + 51366 0.67 0.54865
Target:  5'- cGGCGGgUGUCUGC-UCCCCAcCCc- -3'
miRNA:   3'- cCCGCCgAUAGACGcGGGGGUcGGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.