Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 76270 | 0.7 | 0.636779 |
Target: 5'- ----gCgUGGCGCUGGACCUGgcCGCc -3' miRNA: 3'- uacagGgACUGCGACCUGGGCauGCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 122925 | 0.7 | 0.626651 |
Target: 5'- -cGUCCC-GACGCcagGGACCaCGgucuggugGCGCu -3' miRNA: 3'- uaCAGGGaCUGCGa--CCUGG-GCa-------UGCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 68552 | 0.7 | 0.606414 |
Target: 5'- -cGUCCCauGCGCUGGAuUCCGccggccUGCGCa -3' miRNA: 3'- uaCAGGGacUGCGACCU-GGGC------AUGCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 23818 | 0.71 | 0.586253 |
Target: 5'- uUGgccCCCUGcGCGCcucGGGCCCGcUGCGCc -3' miRNA: 3'- uACa--GGGAC-UGCGa--CCUGGGC-AUGCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 147760 | 0.71 | 0.574214 |
Target: 5'- -gGUCCCgacgcggccgcgGACGCgggGGGCCCGggGCGg -3' miRNA: 3'- uaCAGGGa-----------CUGCGa--CCUGGGCa-UGCg -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 82971 | 0.72 | 0.526745 |
Target: 5'- uGUGUCCCguaaaguuCGCUGG-CgCGUGCGCc -3' miRNA: 3'- -UACAGGGacu-----GCGACCuGgGCAUGCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 86159 | 0.72 | 0.517031 |
Target: 5'- -gGUCCUUGAUGgacgGGACCUGcGCGCg -3' miRNA: 3'- uaCAGGGACUGCga--CCUGGGCaUGCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 56807 | 0.72 | 0.517031 |
Target: 5'- -aGUCCCUGGCGgUGGucgccCCCGggccCGCc -3' miRNA: 3'- uaCAGGGACUGCgACCu----GGGCau--GCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 106747 | 0.72 | 0.507391 |
Target: 5'- -gGUCCCUGACGC-GGGCCgacaaCGgcuccGCGCu -3' miRNA: 3'- uaCAGGGACUGCGaCCUGG-----GCa----UGCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 86709 | 0.73 | 0.433381 |
Target: 5'- cGUGUCCCcguagaUGAUGCgcauggaauaGGGCCCGgggGCGCg -3' miRNA: 3'- -UACAGGG------ACUGCGa---------CCUGGGCa--UGCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 67014 | 0.75 | 0.379734 |
Target: 5'- -cGUCCCgcgguaguuggccgUGACG-UGGGCCCGUACcGCa -3' miRNA: 3'- uaCAGGG--------------ACUGCgACCUGGGCAUG-CG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 76649 | 0.75 | 0.358927 |
Target: 5'- -cGUCCCggcgaccguggccaaGACGCUGGACCag-GCGCg -3' miRNA: 3'- uaCAGGGa--------------CUGCGACCUGGgcaUGCG- -5' |
|||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 92075 | 1.1 | 0.00175 |
Target: 5'- cAUGUCCCUGACGCUGGACCCGUACGCg -3' miRNA: 3'- -UACAGGGACUGCGACCUGGGCAUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home