miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5636 5' -58.6 NC_001806.1 + 5060 0.68 0.667846
Target:  5'- -gGCCCCCcGCUcgucgCGGuCUgggCUCGGGg -3'
miRNA:   3'- caCGGGGGaCGAa----GUC-GAa--GAGCCCg -5'
5636 5' -58.6 NC_001806.1 + 6823 0.71 0.469665
Target:  5'- -cGUCCCCUGCUgc-GCUcUCcCGGGCu -3'
miRNA:   3'- caCGGGGGACGAaguCGA-AGaGCCCG- -5'
5636 5' -58.6 NC_001806.1 + 20180 0.67 0.717883
Target:  5'- -cGCCCCCgggGC--CGGCgcggagUCGGGCa -3'
miRNA:   3'- caCGGGGGa--CGaaGUCGaag---AGCCCG- -5'
5636 5' -58.6 NC_001806.1 + 20661 0.67 0.737453
Target:  5'- -gGCCCCCgGCgugcCGGCgUCg-GGGCg -3'
miRNA:   3'- caCGGGGGaCGaa--GUCGaAGagCCCG- -5'
5636 5' -58.6 NC_001806.1 + 22076 0.66 0.756662
Target:  5'- -cGCCCCCggggcgggUGCUguaCGGCggCcUGGGCg -3'
miRNA:   3'- caCGGGGG--------ACGAa--GUCGaaGaGCCCG- -5'
5636 5' -58.6 NC_001806.1 + 22320 0.7 0.566596
Target:  5'- -gGaCCaggCCUGCUUCcGgaUCUCGGGCg -3'
miRNA:   3'- caC-GGg--GGACGAAGuCgaAGAGCCCG- -5'
5636 5' -58.6 NC_001806.1 + 23202 0.7 0.556608
Target:  5'- -cGCCCCCUGCUggCGGCgg--CGGccaGCg -3'
miRNA:   3'- caCGGGGGACGAa-GUCGaagaGCC---CG- -5'
5636 5' -58.6 NC_001806.1 + 23820 0.73 0.40709
Target:  5'- -gGCCCCCUGC----GCgcCUCGGGCc -3'
miRNA:   3'- caCGGGGGACGaaguCGaaGAGCCCG- -5'
5636 5' -58.6 NC_001806.1 + 29871 0.66 0.80263
Target:  5'- -cGCCCCCc---UCGGCgcccaUCGGGCc -3'
miRNA:   3'- caCGGGGGacgaAGUCGaag--AGCCCG- -5'
5636 5' -58.6 NC_001806.1 + 30770 0.67 0.717883
Target:  5'- -cGUCCuCCUccGCUUCcGCcucCUCGGGCg -3'
miRNA:   3'- caCGGG-GGA--CGAAGuCGaa-GAGCCCG- -5'
5636 5' -58.6 NC_001806.1 + 30844 0.67 0.717883
Target:  5'- -gGCCCCC-GCgcu-GCUUCU-GGGCc -3'
miRNA:   3'- caCGGGGGaCGaaguCGAAGAgCCCG- -5'
5636 5' -58.6 NC_001806.1 + 43200 0.68 0.63741
Target:  5'- -cGCCCgCgaugGCUUCu-CUUCUCGGGg -3'
miRNA:   3'- caCGGGgGa---CGAAGucGAAGAGCCCg -5'
5636 5' -58.6 NC_001806.1 + 74936 0.71 0.488435
Target:  5'- -cGCCCCCUGagguuaCGGCggcgCUgCGGGCg -3'
miRNA:   3'- caCGGGGGACgaa---GUCGaa--GA-GCCCG- -5'
5636 5' -58.6 NC_001806.1 + 79640 0.66 0.775437
Target:  5'- -cGCCUCCUcccgcGCUUCugccGCUUCUucgucCGGGUc -3'
miRNA:   3'- caCGGGGGA-----CGAAGu---CGAAGA-----GCCCG- -5'
5636 5' -58.6 NC_001806.1 + 82723 0.67 0.717883
Target:  5'- gGUGUCCggggUCUGCggggCGGCggcgUCgUCGGGCg -3'
miRNA:   3'- -CACGGG----GGACGaa--GUCGa---AG-AGCCCG- -5'
5636 5' -58.6 NC_001806.1 + 89081 0.68 0.63741
Target:  5'- cGUGCaCCCCgGCgc--GCUUCUCcggggGGGCa -3'
miRNA:   3'- -CACG-GGGGaCGaaguCGAAGAG-----CCCG- -5'
5636 5' -58.6 NC_001806.1 + 92110 1.12 0.000908
Target:  5'- cGUGCCCCCUGCUUCAGCUUCUCGGGCg -3'
miRNA:   3'- -CACGGGGGACGAAGUCGAAGAGCCCG- -5'
5636 5' -58.6 NC_001806.1 + 92363 0.7 0.526974
Target:  5'- -gGCCCCC-GCcgagagCAGCUUCgaGGGCg -3'
miRNA:   3'- caCGGGGGaCGaa----GUCGAAGagCCCG- -5'
5636 5' -58.6 NC_001806.1 + 98164 0.69 0.607951
Target:  5'- -cGCCCCCUGg-UCAGCUUUcgguacgaagaccaGGGCc -3'
miRNA:   3'- caCGGGGGACgaAGUCGAAGag------------CCCG- -5'
5636 5' -58.6 NC_001806.1 + 103125 0.7 0.566596
Target:  5'- -gGCCgCCUGCauggCGGCgUUCUCcaGGGCa -3'
miRNA:   3'- caCGGgGGACGaa--GUCG-AAGAG--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.