Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5636 | 5' | -58.6 | NC_001806.1 | + | 92363 | 0.7 | 0.526974 |
Target: 5'- -gGCCCCC-GCcgagagCAGCUUCgaGGGCg -3' miRNA: 3'- caCGGGGGaCGaa----GUCGAAGagCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 74936 | 0.71 | 0.488435 |
Target: 5'- -cGCCCCCUGagguuaCGGCggcgCUgCGGGCg -3' miRNA: 3'- caCGGGGGACgaa---GUCGaa--GA-GCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 6823 | 0.71 | 0.469665 |
Target: 5'- -cGUCCCCUGCUgc-GCUcUCcCGGGCu -3' miRNA: 3'- caCGGGGGACGAaguCGA-AGaGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 23820 | 0.73 | 0.40709 |
Target: 5'- -gGCCCCCUGC----GCgcCUCGGGCc -3' miRNA: 3'- caCGGGGGACGaaguCGaaGAGCCCG- -5' |
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5636 | 5' | -58.6 | NC_001806.1 | + | 92110 | 1.12 | 0.000908 |
Target: 5'- cGUGCCCCCUGCUUCAGCUUCUCGGGCg -3' miRNA: 3'- -CACGGGGGACGAAGUCGAAGAGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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