miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5637 3' -59.1 NC_001806.1 + 134234 0.66 0.806003
Target:  5'- cGCAGUcggaGCG-GGG--GGGCGG-CCCCGg -3'
miRNA:   3'- -CGUCA----UGCaCCUggUCCGCCaGGGGU- -5'
5637 3' -59.1 NC_001806.1 + 17831 0.66 0.797292
Target:  5'- aGUGGaccgugGCGUGGACCccguuccccGCGGcCCCCAa -3'
miRNA:   3'- -CGUCa-----UGCACCUGGuc-------CGCCaGGGGU- -5'
5637 3' -59.1 NC_001806.1 + 51644 0.66 0.797292
Target:  5'- cGCAGUAC-UGGAaguaCCugcagacGGUGGUgCCCAg -3'
miRNA:   3'- -CGUCAUGcACCU----GGu------CCGCCAgGGGU- -5'
5637 3' -59.1 NC_001806.1 + 147205 0.66 0.788438
Target:  5'- cGCGGccccgGCGgcGGAagAGGCGGcCCCCGc -3'
miRNA:   3'- -CGUCa----UGCa-CCUggUCCGCCaGGGGU- -5'
5637 3' -59.1 NC_001806.1 + 126454 0.66 0.783061
Target:  5'- cCGGUcgaucccgaagcccaGCGUGcGAuacuucgcgcCCGGGCGcGUCCCCGg -3'
miRNA:   3'- cGUCA---------------UGCAC-CU----------GGUCCGC-CAGGGGU- -5'
5637 3' -59.1 NC_001806.1 + 56521 0.66 0.77945
Target:  5'- gGCAG-GCccGGGCCcGGCGuUCCCCGg -3'
miRNA:   3'- -CGUCaUGcaCCUGGuCCGCcAGGGGU- -5'
5637 3' -59.1 NC_001806.1 + 12160 0.66 0.770337
Target:  5'- gGCGGggcgACGUGGGCac-GCGGUCaCCGu -3'
miRNA:   3'- -CGUCa---UGCACCUGgucCGCCAGgGGU- -5'
5637 3' -59.1 NC_001806.1 + 100521 0.66 0.770337
Target:  5'- gGCGGUAugucCGUGGACUccGgGG-CCCCGu -3'
miRNA:   3'- -CGUCAU----GCACCUGGucCgCCaGGGGU- -5'
5637 3' -59.1 NC_001806.1 + 132177 0.67 0.764812
Target:  5'- cGCGGcugGCGUGGgcgcGCCuGGCGGccauucgcgacaccCCCCAg -3'
miRNA:   3'- -CGUCa--UGCACC----UGGuCCGCCa-------------GGGGU- -5'
5637 3' -59.1 NC_001806.1 + 76310 0.67 0.761106
Target:  5'- cGCGGUGCGcaacGACCcGGCGGcggCCgCCGa -3'
miRNA:   3'- -CGUCAUGCac--CUGGuCCGCCa--GG-GGU- -5'
5637 3' -59.1 NC_001806.1 + 86035 0.67 0.761106
Target:  5'- gGCAGggccGCGgggGGGgCGGGCucGUCCCCu -3'
miRNA:   3'- -CGUCa---UGCa--CCUgGUCCGc-CAGGGGu -5'
5637 3' -59.1 NC_001806.1 + 104178 0.67 0.751766
Target:  5'- cGCAGaUGCaGUcGGGgCGGcGCGGUCCCa- -3'
miRNA:   3'- -CGUC-AUG-CA-CCUgGUC-CGCCAGGGgu -5'
5637 3' -59.1 NC_001806.1 + 122423 0.67 0.732795
Target:  5'- cGCAGgaACGUGuuGACCugcuccGcGUGGUCCCCGa -3'
miRNA:   3'- -CGUCa-UGCAC--CUGGu-----C-CGCCAGGGGU- -5'
5637 3' -59.1 NC_001806.1 + 102483 0.67 0.732795
Target:  5'- aGCGGUACuGUGG-CCGGccgcccuCGGUCCCg- -3'
miRNA:   3'- -CGUCAUG-CACCuGGUCc------GCCAGGGgu -5'
5637 3' -59.1 NC_001806.1 + 100440 0.67 0.72318
Target:  5'- gGCAGUACcggGGACaAGGCGa-CCCCGc -3'
miRNA:   3'- -CGUCAUGca-CCUGgUCCGCcaGGGGU- -5'
5637 3' -59.1 NC_001806.1 + 65615 0.67 0.713491
Target:  5'- gGCAGUacACGUGGugGCCguGGGCGaGaggggCCCCGg -3'
miRNA:   3'- -CGUCA--UGCACC--UGG--UCCGC-Ca----GGGGU- -5'
5637 3' -59.1 NC_001806.1 + 137196 0.68 0.703735
Target:  5'- uGCAGUGguucCG-GGACguGGCGGccuuagagUCCCCc -3'
miRNA:   3'- -CGUCAU----GCaCCUGguCCGCC--------AGGGGu -5'
5637 3' -59.1 NC_001806.1 + 126400 0.68 0.693922
Target:  5'- cGC-GUACGaGGACUugauGGCacaccGGUCCCCGg -3'
miRNA:   3'- -CGuCAUGCaCCUGGu---CCG-----CCAGGGGU- -5'
5637 3' -59.1 NC_001806.1 + 20396 0.68 0.68406
Target:  5'- gGCGG-GCG-GGACCGGGgGG-CCCgGg -3'
miRNA:   3'- -CGUCaUGCaCCUGGUCCgCCaGGGgU- -5'
5637 3' -59.1 NC_001806.1 + 37051 0.68 0.664222
Target:  5'- gGCGGUGCGUGucuaggauuucGAUCAGGCccgccaugcaGG-CCCCGg -3'
miRNA:   3'- -CGUCAUGCAC-----------CUGGUCCG----------CCaGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.