Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5639 | 3' | -51.8 | NC_001806.1 | + | 70333 | 0.66 | 0.984812 |
Target: 5'- cCugGCCgCCCGGGg--GGUGcUGCAg- -3' miRNA: 3'- cGugCGG-GGGUCCauuUCAC-AUGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 21369 | 0.68 | 0.952443 |
Target: 5'- uGCugGCCUCCAuGGUAGAGgagGCc-- -3' miRNA: 3'- -CGugCGGGGGU-CCAUUUCacaUGuau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 123192 | 0.67 | 0.959964 |
Target: 5'- aGCAC-CCCCCGGGUcgcccgcAGGGUG-GCGg- -3' miRNA: 3'- -CGUGcGGGGGUCCA-------UUUCACaUGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 104196 | 0.67 | 0.96287 |
Target: 5'- gGCGCGgUCCCAGGUccacuucgcauauuAAGGUGacGCGUGu -3' miRNA: 3'- -CGUGCgGGGGUCCA--------------UUUCACa-UGUAU- -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 30216 | 0.67 | 0.967273 |
Target: 5'- cGCGCGCCCCCGcgcGGccguGGccccGUGCGUGc -3' miRNA: 3'- -CGUGCGGGGGU---CCauu-UCa---CAUGUAU- -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 20658 | 0.67 | 0.969484 |
Target: 5'- aCGgGCCCCCGGcGUGccggcgucggggcgGGGUcGUGCAUAa -3' miRNA: 3'- cGUgCGGGGGUC-CAU--------------UUCA-CAUGUAU- -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 49973 | 0.67 | 0.970399 |
Target: 5'- gGCugGCCaucaaCGGGU-GGGUGUGCGg- -3' miRNA: 3'- -CGugCGGgg---GUCCAuUUCACAUGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 138804 | 0.67 | 0.970399 |
Target: 5'- -gGCGCCCCCGGc--GAGcGUGCGUu -3' miRNA: 3'- cgUGCGGGGGUCcauUUCaCAUGUAu -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 117572 | 0.67 | 0.973024 |
Target: 5'- -gACGCCCCCGGaGUuaaacuuuuuaauAAAGUGUuCAa- -3' miRNA: 3'- cgUGCGGGGGUC-CA-------------UUUCACAuGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 128060 | 0.69 | 0.93366 |
Target: 5'- cCACgGCCCCCAGGUGGGGg------- -3' miRNA: 3'- cGUG-CGGGGGUCCAUUUCacauguau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 19920 | 0.69 | 0.922728 |
Target: 5'- gGUGCGUCCCCuguguuucguGGGUGGGGUGgGCGg- -3' miRNA: 3'- -CGUGCGGGGG----------UCCAUUUCACaUGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 48124 | 0.69 | 0.916875 |
Target: 5'- cCGCGCCUCUGGGUAcuuuauGGUGUugAUu -3' miRNA: 3'- cGUGCGGGGGUCCAUu-----UCACAugUAu -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 34849 | 0.76 | 0.584295 |
Target: 5'- cCACGCCCCCAGcGUcgGGUGUcACGg- -3' miRNA: 3'- cGUGCGGGGGUC-CAuuUCACA-UGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 28 | 0.73 | 0.752056 |
Target: 5'- cGCGCGaCCCCCGGGg--GGUGUGu--- -3' miRNA: 3'- -CGUGC-GGGGGUCCauuUCACAUguau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 151738 | 0.73 | 0.752056 |
Target: 5'- cGCGCGaCCCCCGGGg--GGUGUGu--- -3' miRNA: 3'- -CGUGC-GGGGGUCCauuUCACAUguau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 82217 | 0.72 | 0.800436 |
Target: 5'- uCGCGCCCCCGGGggcguuGUGUggGCGa- -3' miRNA: 3'- cGUGCGGGGGUCCauuu--CACA--UGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 22070 | 0.72 | 0.809658 |
Target: 5'- gGCcccCGCCCCCGGGgcGGGUgcuGUACGg- -3' miRNA: 3'- -CGu--GCGGGGGUCCauUUCA---CAUGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 66998 | 0.7 | 0.876436 |
Target: 5'- gGCGCGCCCCCAcccgcgucccgcGGUAGuuggccGUG-ACGUGg -3' miRNA: 3'- -CGUGCGGGGGU------------CCAUUu-----CACaUGUAU- -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 116963 | 0.7 | 0.883793 |
Target: 5'- cCugGCUCCCGuGGUucGGGUGUGCAc- -3' miRNA: 3'- cGugCGGGGGU-CCAu-UUCACAUGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 80326 | 0.69 | 0.916875 |
Target: 5'- uGCGCGCCCCCGGGg-------GCAUu -3' miRNA: 3'- -CGUGCGGGGGUCCauuucacaUGUAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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