Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5639 | 3' | -51.8 | NC_001806.1 | + | 81464 | 0.66 | 0.978487 |
Target: 5'- cGCACGgCCCCuuGGGUGcccuGGGgGUGCGg- -3' miRNA: 3'- -CGUGCgGGGG--UCCAU----UUCaCAUGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 82217 | 0.72 | 0.800436 |
Target: 5'- uCGCGCCCCCGGGggcguuGUGUggGCGa- -3' miRNA: 3'- cGUGCGGGGGUCCauuu--CACA--UGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 89807 | 1 | 0.026134 |
Target: 5'- gGCACGCCCCCAGG-AAAGUGUACAUAu -3' miRNA: 3'- -CGUGCGGGGGUCCaUUUCACAUGUAU- -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 104196 | 0.67 | 0.96287 |
Target: 5'- gGCGCGgUCCCAGGUccacuucgcauauuAAGGUGacGCGUGu -3' miRNA: 3'- -CGUGCgGGGGUCCA--------------UUUCACa-UGUAU- -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 116963 | 0.7 | 0.883793 |
Target: 5'- cCugGCUCCCGuGGUucGGGUGUGCAc- -3' miRNA: 3'- cGugCGGGGGU-CCAu-UUCACAUGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 117572 | 0.67 | 0.973024 |
Target: 5'- -gACGCCCCCGGaGUuaaacuuuuuaauAAAGUGUuCAa- -3' miRNA: 3'- cgUGCGGGGGUC-CA-------------UUUCACAuGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 123192 | 0.67 | 0.959964 |
Target: 5'- aGCAC-CCCCCGGGUcgcccgcAGGGUG-GCGg- -3' miRNA: 3'- -CGUGcGGGGGUCCA-------UUUCACaUGUau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 128060 | 0.69 | 0.93366 |
Target: 5'- cCACgGCCCCCAGGUGGGGg------- -3' miRNA: 3'- cGUG-CGGGGGUCCAUUUCacauguau -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 138804 | 0.67 | 0.970399 |
Target: 5'- -gGCGCCCCCGGc--GAGcGUGCGUu -3' miRNA: 3'- cgUGCGGGGGUCcauUUCaCAUGUAu -5' |
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5639 | 3' | -51.8 | NC_001806.1 | + | 151738 | 0.73 | 0.752056 |
Target: 5'- cGCGCGaCCCCCGGGg--GGUGUGu--- -3' miRNA: 3'- -CGUGC-GGGGGUCCauuUCACAUguau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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