miRNA display CGI


Results 21 - 40 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5640 3' -55.1 NC_001806.1 + 25232 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 26010 0.66 0.933463
Target:  5'- aGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 26034 0.66 0.933463
Target:  5'- aGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 52185 0.66 0.933463
Target:  5'- cAGAC-CGGc-AAGCGGAGCGGcGGUa- -3'
miRNA:   3'- -UCUGcGCCauUUUGUCUCGCC-CCGcg -5'
5640 3' -55.1 NC_001806.1 + 151045 0.66 0.933463
Target:  5'- cGGACGUGGggcgAGAagcgcacccgcGCGGGggucGCGGGGguCGCg -3'
miRNA:   3'- -UCUGCGCCa---UUU-----------UGUCU----CGCCCC--GCG- -5'
5640 3' -55.1 NC_001806.1 + 95552 0.66 0.933463
Target:  5'- gGGGCGCuGcGUccgcGAGCAGcGCGGGGaGCu -3'
miRNA:   3'- -UCUGCG-C-CAu---UUUGUCuCGCCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 25164 0.66 0.933463
Target:  5'- gAGGgGCGGgagGGGGCgaGGGGCGggaGGGgGCg -3'
miRNA:   3'- -UCUgCGCCa--UUUUG--UCUCGC---CCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 68923 0.66 0.933463
Target:  5'- uGGugGaCGaGUAccuGACGacccccGAGCGGGGgGCu -3'
miRNA:   3'- -UCugC-GC-CAUu--UUGU------CUCGCCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 25986 0.66 0.933463
Target:  5'- aGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 141390 0.66 0.931942
Target:  5'- uGGGCGUGuGUGcccCAGAGCauaaacaccaggccGGGGCGg -3'
miRNA:   3'- -UCUGCGC-CAUuuuGUCUCG--------------CCCCGCg -5'
5640 3' -55.1 NC_001806.1 + 29799 0.66 0.930916
Target:  5'- gAGGCGCcgccgcgccccccguGACGG-GCGGGGCGUc -3'
miRNA:   3'- -UCUGCGccauu----------UUGUCuCGCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 134283 0.66 0.928308
Target:  5'- cGGgGUGGcacAGAACAGGGCcgagagaacGGGGgGCg -3'
miRNA:   3'- uCUgCGCCa--UUUUGUCUCG---------CCCCgCG- -5'
5640 3' -55.1 NC_001806.1 + 25962 0.66 0.928308
Target:  5'- gGGA-GCGGggGGA-GGAGCGGGGgGa -3'
miRNA:   3'- -UCUgCGCCauUUUgUCUCGCCCCgCg -5'
5640 3' -55.1 NC_001806.1 + 127897 0.66 0.928308
Target:  5'- uAGGCGCGGgugcAGCGGAGCacggccaugccGaGGGCa- -3'
miRNA:   3'- -UCUGCGCCauu-UUGUCUCG-----------C-CCCGcg -5'
5640 3' -55.1 NC_001806.1 + 40843 0.66 0.928308
Target:  5'- gAGAacCGUGGacgacguACGGGGCGGGGacggGCa -3'
miRNA:   3'- -UCU--GCGCCauuu---UGUCUCGCCCCg---CG- -5'
5640 3' -55.1 NC_001806.1 + 100499 0.66 0.928308
Target:  5'- cGGCGCGGcagcGAUcGAGCcGGGCGg -3'
miRNA:   3'- uCUGCGCCauu-UUGuCUCGcCCCGCg -5'
5640 3' -55.1 NC_001806.1 + 34319 0.66 0.928308
Target:  5'- nGGCGCGc-----CGGA-CGGGGCGCu -3'
miRNA:   3'- uCUGCGCcauuuuGUCUcGCCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 15747 0.66 0.928308
Target:  5'- gGGA-GCGGUAGcGCGaGGUGaGGCGCg -3'
miRNA:   3'- -UCUgCGCCAUUuUGUcUCGCcCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 4828 0.66 0.928308
Target:  5'- cGGgGCGGcGAGgccGCGGGGUcGGGCGUc -3'
miRNA:   3'- uCUgCGCCaUUU---UGUCUCGcCCCGCG- -5'
5640 3' -55.1 NC_001806.1 + 22552 0.66 0.928308
Target:  5'- gAGaACGCGGcgcuGACGGGggccGCGGGGaGCc -3'
miRNA:   3'- -UC-UGCGCCauu-UUGUCU----CGCCCCgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.