Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5640 | 5' | -57.4 | NC_001806.1 | + | 78695 | 0.66 | 0.855352 |
Target: 5'- -cGCcCGUCGucgugGCGCUCCGCaaCACCa -3' miRNA: 3'- caUGuGCAGCca---CGCGAGGUG--GUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 83195 | 0.67 | 0.822968 |
Target: 5'- -cGCcCGUCGGUaCGCUCgacgaggacguCGCCGCCg -3' miRNA: 3'- caUGuGCAGCCAcGCGAG-----------GUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 85173 | 0.67 | 0.822968 |
Target: 5'- -aACGCGggagaCGG-GCGgUUCGCCGCCa -3' miRNA: 3'- caUGUGCa----GCCaCGCgAGGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 88590 | 1.07 | 0.00295 |
Target: 5'- aGUACACGUCGGUGCGCUCCACCACCUc -3' miRNA: 3'- -CAUGUGCAGCCACGCGAGGUGGUGGA- -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 110985 | 0.66 | 0.839531 |
Target: 5'- cGUGgGCGgugCGG-GCGCUCCuCCugUa -3' miRNA: 3'- -CAUgUGCa--GCCaCGCGAGGuGGugGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 119942 | 0.71 | 0.550512 |
Target: 5'- -aACGCGUC-GUGCGC-CC-CCACCa -3' miRNA: 3'- caUGUGCAGcCACGCGaGGuGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 124211 | 0.67 | 0.805723 |
Target: 5'- --gUugGUCGGggagUGCGUUCUACgCGCCg -3' miRNA: 3'- cauGugCAGCC----ACGCGAGGUG-GUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 126554 | 0.66 | 0.836276 |
Target: 5'- -cACGCcUCGGgcgaaaaaaggcgGUGCUCCGCCGCg- -3' miRNA: 3'- caUGUGcAGCCa------------CGCGAGGUGGUGga -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 127631 | 0.7 | 0.631067 |
Target: 5'- -aAUACGUCGGUuugGUcgUCCGCCACCUc -3' miRNA: 3'- caUGUGCAGCCA---CGcgAGGUGGUGGA- -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 131358 | 0.67 | 0.805723 |
Target: 5'- -gGCGCuGUCGGa--GCUCC-CCACCg -3' miRNA: 3'- caUGUG-CAGCCacgCGAGGuGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 132640 | 0.71 | 0.570447 |
Target: 5'- -gGCACGggaccUGGUGCGCggggCCGCgGCCg -3' miRNA: 3'- caUGUGCa----GCCACGCGa---GGUGgUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 136304 | 0.66 | 0.855352 |
Target: 5'- aUACACG-CGGU-CGUagUCCGCCACg- -3' miRNA: 3'- cAUGUGCaGCCAcGCG--AGGUGGUGga -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 136362 | 0.67 | 0.796865 |
Target: 5'- -aACcCGgggcCGGcGCGCUCCGCgGCCUc -3' miRNA: 3'- caUGuGCa---GCCaCGCGAGGUGgUGGA- -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 150260 | 0.69 | 0.691693 |
Target: 5'- ---uGCGUCGGUGCcccgggGCUUC-CCGCCUu -3' miRNA: 3'- caugUGCAGCCACG------CGAGGuGGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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