Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5640 | 5' | -57.4 | NC_001806.1 | + | 136304 | 0.66 | 0.855352 |
Target: 5'- aUACACG-CGGU-CGUagUCCGCCACg- -3' miRNA: 3'- cAUGUGCaGCCAcGCG--AGGUGGUGga -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 49712 | 0.69 | 0.701676 |
Target: 5'- -gACGaGUCcGUGCGCUCCGCCcuaGCCc -3' miRNA: 3'- caUGUgCAGcCACGCGAGGUGG---UGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 46118 | 0.68 | 0.721461 |
Target: 5'- ---uGCG-CGG-GCGcCUCCGCCACCc -3' miRNA: 3'- caugUGCaGCCaCGC-GAGGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 76257 | 0.68 | 0.731245 |
Target: 5'- -cGCGCGaUCGGaagcgugGCGCUggaccuggCCGCCGCCg -3' miRNA: 3'- caUGUGC-AGCCa------CGCGA--------GGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 23891 | 0.68 | 0.769446 |
Target: 5'- cGUGCGCGUggUGGUGCuGUacucgCCGCUGCCg -3' miRNA: 3'- -CAUGUGCA--GCCACG-CGa----GGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 23716 | 0.67 | 0.778718 |
Target: 5'- --cCGCG-CGGUGCGCcgggcccgcccCCGCCGCCc -3' miRNA: 3'- cauGUGCaGCCACGCGa----------GGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 9831 | 0.67 | 0.796865 |
Target: 5'- -cGCGCuGUgGGagggGCuGUUCCACCACCg -3' miRNA: 3'- caUGUG-CAgCCa---CG-CGAGGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 136362 | 0.67 | 0.796865 |
Target: 5'- -aACcCGgggcCGGcGCGCUCCGCgGCCUc -3' miRNA: 3'- caUGuGCa---GCCaCGCGAGGUGgUGGA- -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 131358 | 0.67 | 0.805723 |
Target: 5'- -gGCGCuGUCGGa--GCUCC-CCACCg -3' miRNA: 3'- caUGUG-CAGCCacgCGAGGuGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 150260 | 0.69 | 0.691693 |
Target: 5'- ---uGCGUCGGUGCcccgggGCUUC-CCGCCUu -3' miRNA: 3'- caugUGCAGCCACG------CGAGGuGGUGGA- -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 63759 | 0.69 | 0.681661 |
Target: 5'- -cGCACGUCGGUGUgccacgGCUCCagguacacgcACgCGCCg -3' miRNA: 3'- caUGUGCAGCCACG------CGAGG----------UG-GUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 9798 | 0.69 | 0.671589 |
Target: 5'- cGUGCGgGUgGGUGgGCUCgGCCAaauCCg -3' miRNA: 3'- -CAUGUgCAgCCACgCGAGgUGGU---GGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 3014 | 0.79 | 0.227405 |
Target: 5'- -aGCGCGUCGGcggcguccggUGCGCUggCCGCCGCCg -3' miRNA: 3'- caUGUGCAGCC----------ACGCGA--GGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 47166 | 0.72 | 0.492189 |
Target: 5'- -gACAUGaacgCGGacgGCGCUUCGCCACCg -3' miRNA: 3'- caUGUGCa---GCCa--CGCGAGGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 78602 | 0.72 | 0.492189 |
Target: 5'- -aGCACGUCGccGUGCcggCCGCCGCCa -3' miRNA: 3'- caUGUGCAGCcaCGCGa--GGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 119942 | 0.71 | 0.550512 |
Target: 5'- -aACGCGUC-GUGCGC-CC-CCACCa -3' miRNA: 3'- caUGUGCAGcCACGCGaGGuGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 2184 | 0.71 | 0.560455 |
Target: 5'- -gACACGUCGGggGCGCcggUCCAauugcCCGCCc -3' miRNA: 3'- caUGUGCAGCCa-CGCG---AGGU-----GGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 132640 | 0.71 | 0.570447 |
Target: 5'- -gGCACGggaccUGGUGCGCggggCCGCgGCCg -3' miRNA: 3'- caUGUGCa----GCCACGCGa---GGUGgUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 73267 | 0.7 | 0.631067 |
Target: 5'- --cCACGgCGGUuaaguucaccgcGUGCUCCGCCGCCc -3' miRNA: 3'- cauGUGCaGCCA------------CGCGAGGUGGUGGa -5' |
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5640 | 5' | -57.4 | NC_001806.1 | + | 127631 | 0.7 | 0.631067 |
Target: 5'- -aAUACGUCGGUuugGUcgUCCGCCACCUc -3' miRNA: 3'- caUGUGCAGCCA---CGcgAGGUGGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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