miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5640 5' -57.4 NC_001806.1 + 46118 0.68 0.721461
Target:  5'- ---uGCG-CGG-GCGcCUCCGCCACCc -3'
miRNA:   3'- caugUGCaGCCaCGC-GAGGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 49712 0.69 0.701676
Target:  5'- -gACGaGUCcGUGCGCUCCGCCcuaGCCc -3'
miRNA:   3'- caUGUgCAGcCACGCGAGGUGG---UGGa -5'
5640 5' -57.4 NC_001806.1 + 150260 0.69 0.691693
Target:  5'- ---uGCGUCGGUGCcccgggGCUUC-CCGCCUu -3'
miRNA:   3'- caugUGCAGCCACG------CGAGGuGGUGGA- -5'
5640 5' -57.4 NC_001806.1 + 63759 0.69 0.681661
Target:  5'- -cGCACGUCGGUGUgccacgGCUCCagguacacgcACgCGCCg -3'
miRNA:   3'- caUGUGCAGCCACG------CGAGG----------UG-GUGGa -5'
5640 5' -57.4 NC_001806.1 + 9798 0.69 0.671589
Target:  5'- cGUGCGgGUgGGUGgGCUCgGCCAaauCCg -3'
miRNA:   3'- -CAUGUgCAgCCACgCGAGgUGGU---GGa -5'
5640 5' -57.4 NC_001806.1 + 73267 0.7 0.631067
Target:  5'- --cCACGgCGGUuaaguucaccgcGUGCUCCGCCGCCc -3'
miRNA:   3'- cauGUGCaGCCA------------CGCGAGGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 127631 0.7 0.631067
Target:  5'- -aAUACGUCGGUuugGUcgUCCGCCACCUc -3'
miRNA:   3'- caUGUGCAGCCA---CGcgAGGUGGUGGA- -5'
5640 5' -57.4 NC_001806.1 + 132640 0.71 0.570447
Target:  5'- -gGCACGggaccUGGUGCGCggggCCGCgGCCg -3'
miRNA:   3'- caUGUGCa----GCCACGCGa---GGUGgUGGa -5'
5640 5' -57.4 NC_001806.1 + 2184 0.71 0.560455
Target:  5'- -gACACGUCGGggGCGCcggUCCAauugcCCGCCc -3'
miRNA:   3'- caUGUGCAGCCa-CGCG---AGGU-----GGUGGa -5'
5640 5' -57.4 NC_001806.1 + 119942 0.71 0.550512
Target:  5'- -aACGCGUC-GUGCGC-CC-CCACCa -3'
miRNA:   3'- caUGUGCAGcCACGCGaGGuGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 78602 0.72 0.492189
Target:  5'- -aGCACGUCGccGUGCcggCCGCCGCCa -3'
miRNA:   3'- caUGUGCAGCcaCGCGa--GGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 47166 0.72 0.492189
Target:  5'- -gACAUGaacgCGGacgGCGCUUCGCCACCg -3'
miRNA:   3'- caUGUGCa---GCCa--CGCGAGGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 3014 0.79 0.227405
Target:  5'- -aGCGCGUCGGcggcguccggUGCGCUggCCGCCGCCg -3'
miRNA:   3'- caUGUGCAGCC----------ACGCGA--GGUGGUGGa -5'
5640 5' -57.4 NC_001806.1 + 88590 1.07 0.00295
Target:  5'- aGUACACGUCGGUGCGCUCCACCACCUc -3'
miRNA:   3'- -CAUGUGCAGCCACGCGAGGUGGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.