miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5642 3' -57.6 NC_001806.1 + 17672 0.66 0.841767
Target:  5'- ---cUCGCCUCuaccacuugUGGGUGguaggCgCGGCGGAu -3'
miRNA:   3'- auuuAGCGGGG---------ACCCACa----G-GCCGUCU- -5'
5642 3' -57.6 NC_001806.1 + 20179 0.66 0.833567
Target:  5'- ----cCGCCCCcGGGg--CCGGCgcGGAg -3'
miRNA:   3'- auuuaGCGGGGaCCCacaGGCCG--UCU- -5'
5642 3' -57.6 NC_001806.1 + 50943 0.66 0.816626
Target:  5'- ----gCGCCCCgGGcccccGUGUCCgggacGGCAGAc -3'
miRNA:   3'- auuuaGCGGGGaCC-----CACAGG-----CCGUCU- -5'
5642 3' -57.6 NC_001806.1 + 83025 0.67 0.780808
Target:  5'- ---uUCGCCCCccGGG-GUCCuGGCGa- -3'
miRNA:   3'- auuuAGCGGGGa-CCCaCAGG-CCGUcu -5'
5642 3' -57.6 NC_001806.1 + 39176 0.67 0.771498
Target:  5'- uUGGAUCGCCCC-GGGg---CGGCGGc -3'
miRNA:   3'- -AUUUAGCGGGGaCCCacagGCCGUCu -5'
5642 3' -57.6 NC_001806.1 + 82500 0.67 0.752517
Target:  5'- gAAggCGUCaCCUGGGUGgCCGGUguAGGg -3'
miRNA:   3'- aUUuaGCGG-GGACCCACaGGCCG--UCU- -5'
5642 3' -57.6 NC_001806.1 + 148171 0.69 0.687278
Target:  5'- ----gCGCCUCUgcgugggggggcgcgGGGcGUCCGGCGGGg -3'
miRNA:   3'- auuuaGCGGGGA---------------CCCaCAGGCCGUCU- -5'
5642 3' -57.6 NC_001806.1 + 63400 0.7 0.622076
Target:  5'- ----cCGcCCCCUGGGUGUCguagauguagUGGCGGu -3'
miRNA:   3'- auuuaGC-GGGGACCCACAG----------GCCGUCu -5'
5642 3' -57.6 NC_001806.1 + 84537 0.7 0.611863
Target:  5'- gAGGUUGaCCCCUGGGUucuGUUCGGCc-- -3'
miRNA:   3'- aUUUAGC-GGGGACCCA---CAGGCCGucu -5'
5642 3' -57.6 NC_001806.1 + 7869 0.71 0.521453
Target:  5'- --cGUCGCCCCUGuGGcc-CUGGCGGAc -3'
miRNA:   3'- auuUAGCGGGGAC-CCacaGGCCGUCU- -5'
5642 3' -57.6 NC_001806.1 + 113363 0.75 0.329636
Target:  5'- ---cUUGCCCCUGGcGcuaUGUCCGGCGGc -3'
miRNA:   3'- auuuAGCGGGGACC-C---ACAGGCCGUCu -5'
5642 3' -57.6 NC_001806.1 + 6856 0.78 0.224517
Target:  5'- gAAAUCGCCCCcaacgcauccuUGGGUGUggcacaucgaagaaCCGGCGGGa -3'
miRNA:   3'- aUUUAGCGGGG-----------ACCCACA--------------GGCCGUCU- -5'
5642 3' -57.6 NC_001806.1 + 87438 1.07 0.002473
Target:  5'- cUAAAUCGCCCCUGGGUGUCCGGCAGAa -3'
miRNA:   3'- -AUUUAGCGGGGACCCACAGGCCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.