miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5642 5' -61.3 NC_001806.1 + 24078 0.66 0.675992
Target:  5'- uGUCGGCgCuGGGCGCA-CAGG-GCGUGc -3'
miRNA:   3'- cCAGCCG-G-UCCGCGUcGUCCgUGCAU- -5'
5642 5' -61.3 NC_001806.1 + 31991 0.66 0.675001
Target:  5'- gGGUCGGCCacaccacagacguGGGUGUugggGGguGGgGCGg- -3'
miRNA:   3'- -CCAGCCGG-------------UCCGCG----UCguCCgUGCau -5'
5642 5' -61.3 NC_001806.1 + 41476 0.66 0.673018
Target:  5'- -uUCGGCCAGGCGagcgucccgcguuauGCGGGCccaguCGUc -3'
miRNA:   3'- ccAGCCGGUCCGCgu-------------CGUCCGu----GCAu -5'
5642 5' -61.3 NC_001806.1 + 134866 0.66 0.666068
Target:  5'- ---aGGCCAGGCGgAGCAGcgucuGCugGc- -3'
miRNA:   3'- ccagCCGGUCCGCgUCGUC-----CGugCau -5'
5642 5' -61.3 NC_001806.1 + 143404 0.66 0.666068
Target:  5'- cGG-CGGCCGGGuCGCGGCucuuacgagcGGCcCGg- -3'
miRNA:   3'- -CCaGCCGGUCC-GCGUCGu---------CCGuGCau -5'
5642 5' -61.3 NC_001806.1 + 3727 0.66 0.666068
Target:  5'- ---gGGCgcgUAGGCGCGGCgcAGGCugGUc -3'
miRNA:   3'- ccagCCG---GUCCGCGUCG--UCCGugCAu -5'
5642 5' -61.3 NC_001806.1 + 25911 0.66 0.665074
Target:  5'- cGG-CGGuCCGGGCggcgugcgcgcgcGCGGCGGGCGUGg- -3'
miRNA:   3'- -CCaGCC-GGUCCG-------------CGUCGUCCGUGCau -5'
5642 5' -61.3 NC_001806.1 + 11839 0.66 0.656119
Target:  5'- gGGUggaGGCCuGGUuaGgGGCGGGUugGUAu -3'
miRNA:   3'- -CCAg--CCGGuCCG--CgUCGUCCGugCAU- -5'
5642 5' -61.3 NC_001806.1 + 2665 0.66 0.656119
Target:  5'- cGG-CGGCCgcGGGCGCcGCcguguGGCugGg- -3'
miRNA:   3'- -CCaGCCGG--UCCGCGuCGu----CCGugCau -5'
5642 5' -61.3 NC_001806.1 + 132354 0.66 0.656119
Target:  5'- aGGUgGGCCugcGGC-CAcGCGGGCACc-- -3'
miRNA:   3'- -CCAgCCGGu--CCGcGU-CGUCCGUGcau -5'
5642 5' -61.3 NC_001806.1 + 21296 0.66 0.646151
Target:  5'- gGGagGGCCcc-CGCGGCGGGCACc-- -3'
miRNA:   3'- -CCagCCGGuccGCGUCGUCCGUGcau -5'
5642 5' -61.3 NC_001806.1 + 145280 0.66 0.646151
Target:  5'- aGGUCGGCCAcGCcacucGCgGGUGGGCuCGUGu -3'
miRNA:   3'- -CCAGCCGGUcCG-----CG-UCGUCCGuGCAU- -5'
5642 5' -61.3 NC_001806.1 + 10084 0.66 0.643159
Target:  5'- cGGaCGGCCAGGCGaGacguccacguacucGCGGcGCACGg- -3'
miRNA:   3'- -CCaGCCGGUCCGCgU--------------CGUC-CGUGCau -5'
5642 5' -61.3 NC_001806.1 + 2627 0.66 0.636173
Target:  5'- -cUCGGCCAcGGCGC-GCGGGgaGCaGUAg -3'
miRNA:   3'- ccAGCCGGU-CCGCGuCGUCCg-UG-CAU- -5'
5642 5' -61.3 NC_001806.1 + 135662 0.66 0.636173
Target:  5'- gGGUC-GCCAGGCccGCGuuggucucgcGCAGGCGCu-- -3'
miRNA:   3'- -CCAGcCGGUCCG--CGU----------CGUCCGUGcau -5'
5642 5' -61.3 NC_001806.1 + 107030 0.66 0.636173
Target:  5'- gGGUUGGCCGcccgcGGgGCcGCGGGC-UGUGc -3'
miRNA:   3'- -CCAGCCGGU-----CCgCGuCGUCCGuGCAU- -5'
5642 5' -61.3 NC_001806.1 + 24531 0.66 0.636173
Target:  5'- uGGaCGGCCGGGCGgCGGCcucGGGgACc-- -3'
miRNA:   3'- -CCaGCCGGUCCGC-GUCG---UCCgUGcau -5'
5642 5' -61.3 NC_001806.1 + 100303 0.66 0.635175
Target:  5'- cGGaaugCGGCUgggguugGGGCGCGGCAuGGC-CGg- -3'
miRNA:   3'- -CCa---GCCGG-------UCCGCGUCGU-CCGuGCau -5'
5642 5' -61.3 NC_001806.1 + 140973 0.66 0.626192
Target:  5'- aGGUUGGUCAGGUGaggccaCAGC-GGCACc-- -3'
miRNA:   3'- -CCAGCCGGUCCGC------GUCGuCCGUGcau -5'
5642 5' -61.3 NC_001806.1 + 77386 0.66 0.626192
Target:  5'- ---gGGCgCGGGCGCGGCGGcCGCGc- -3'
miRNA:   3'- ccagCCG-GUCCGCGUCGUCcGUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.