miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5643 3' -54 NC_001806.1 + 34309 0.66 0.967901
Target:  5'- cGGCGGGGggCGGcGCGCCGg-ACGGGGc -3'
miRNA:   3'- aCCGUUUCa-GCU-UGUGGUggUGCCCC- -5'
5643 3' -54 NC_001806.1 + 42638 0.66 0.967901
Target:  5'- cGGCGgcGUCGcgu-CCGgUGCGGGGg -3'
miRNA:   3'- aCCGUuuCAGCuuguGGUgGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 128888 0.66 0.967901
Target:  5'- gGGCGcgGAGUCGGGagauCC-UCugGGGGc -3'
miRNA:   3'- aCCGU--UUCAGCUUgu--GGuGGugCCCC- -5'
5643 3' -54 NC_001806.1 + 89108 0.66 0.967901
Target:  5'- gGGCAuccUCGucCAgCAcCCGCGGGGc -3'
miRNA:   3'- aCCGUuucAGCuuGUgGU-GGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 30293 0.66 0.967901
Target:  5'- gGGCGGAGcCGGcCGCCcgccCCGCGGa- -3'
miRNA:   3'- aCCGUUUCaGCUuGUGGu---GGUGCCcc -5'
5643 3' -54 NC_001806.1 + 65574 0.66 0.967901
Target:  5'- gGGCGucuuGUCGGaaaGCACCAUCACGc-- -3'
miRNA:   3'- aCCGUuu--CAGCU---UGUGGUGGUGCccc -5'
5643 3' -54 NC_001806.1 + 135045 0.66 0.964706
Target:  5'- gGGCGAccgCGAucuGgACCGgccCCGCGGGGa -3'
miRNA:   3'- aCCGUUucaGCU---UgUGGU---GGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 32472 0.66 0.964706
Target:  5'- aGGCGGGGUgGGACACaUGCCuucuuggaguACGuGGGu -3'
miRNA:   3'- aCCGUUUCAgCUUGUG-GUGG----------UGC-CCC- -5'
5643 3' -54 NC_001806.1 + 55311 0.66 0.964706
Target:  5'- gGGCGcuGUCGuACACCAggagucccCCGggUGGGGc -3'
miRNA:   3'- aCCGUuuCAGCuUGUGGU--------GGU--GCCCC- -5'
5643 3' -54 NC_001806.1 + 41726 0.66 0.961294
Target:  5'- cUGGCGGGcgcaaaCGcGgGCCAcCCGCGGGGg -3'
miRNA:   3'- -ACCGUUUca----GCuUgUGGU-GGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 28308 0.66 0.961294
Target:  5'- cGG--GAGcCGGGCGCCAUguUGGGGc -3'
miRNA:   3'- aCCguUUCaGCUUGUGGUGguGCCCC- -5'
5643 3' -54 NC_001806.1 + 73910 0.66 0.961294
Target:  5'- aUGcGCGAGGcccUCG-ACGCCcucGCuCGCGGGGu -3'
miRNA:   3'- -AC-CGUUUC---AGCuUGUGG---UG-GUGCCCC- -5'
5643 3' -54 NC_001806.1 + 2521 0.66 0.961294
Target:  5'- cGGCGGGGgCGGGCccgGCgCACCGCGcGGc -3'
miRNA:   3'- aCCGUUUCaGCUUG---UG-GUGGUGC-CCc -5'
5643 3' -54 NC_001806.1 + 99944 0.66 0.96094
Target:  5'- aUGGCGggccgcgcgccggGAGUCGAccccgcgcggcGCGCCucgaGCCucccCGGGGu -3'
miRNA:   3'- -ACCGU-------------UUCAGCU-----------UGUGG----UGGu---GCCCC- -5'
5643 3' -54 NC_001806.1 + 119591 0.66 0.95766
Target:  5'- cUGGC-GGGUCugGAGCcCCcCgGCGGGGg -3'
miRNA:   3'- -ACCGuUUCAG--CUUGuGGuGgUGCCCC- -5'
5643 3' -54 NC_001806.1 + 20683 0.66 0.95766
Target:  5'- gGGCGGGGUCGuGCAUaauggaauuCCGuuCGGGGu -3'
miRNA:   3'- aCCGUUUCAGCuUGUGgu-------GGU--GCCCC- -5'
5643 3' -54 NC_001806.1 + 147216 0.66 0.95766
Target:  5'- cGGCGGAagaGGcgGCCcCCGCGGGGg -3'
miRNA:   3'- aCCGUUUcagCUugUGGuGGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 132630 0.66 0.95766
Target:  5'- cGGCcGAGUCGGcacgGgACCuggugCGCGGGGc -3'
miRNA:   3'- aCCGuUUCAGCU----UgUGGug---GUGCCCC- -5'
5643 3' -54 NC_001806.1 + 94293 0.66 0.95766
Target:  5'- gGGCAgccugGAGaCGuuCGCgACCGCGGGa -3'
miRNA:   3'- aCCGU-----UUCaGCuuGUGgUGGUGCCCc -5'
5643 3' -54 NC_001806.1 + 82826 0.66 0.95766
Target:  5'- uUGGCGuccuAGUCGGGaagacaACCuCCagcucgGCGGGGg -3'
miRNA:   3'- -ACCGUu---UCAGCUUg-----UGGuGG------UGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.