miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5643 3' -54 NC_001806.1 + 42000 0.66 0.95766
Target:  5'- gGGCGAGGgcu-GCuCCgugcugGCCGCGGGGu -3'
miRNA:   3'- aCCGUUUCagcuUGuGG------UGGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 147658 0.66 0.957284
Target:  5'- -cGCGGGG-CGGGCGgccggcuCCGCCcCGGGGg -3'
miRNA:   3'- acCGUUUCaGCUUGU-------GGUGGuGCCCC- -5'
5643 3' -54 NC_001806.1 + 102853 0.66 0.953799
Target:  5'- cGGCccg--CGuACACCAuguguagcagauCCACGGGGa -3'
miRNA:   3'- aCCGuuucaGCuUGUGGU------------GGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 45285 0.66 0.953799
Target:  5'- cGGCgGGAGacgCGGGC-CCG-CGCGGGGa -3'
miRNA:   3'- aCCG-UUUCa--GCUUGuGGUgGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 72063 0.66 0.953799
Target:  5'- cGGCGAGGUgGGcuucuucggggaGC-CCGCgGCGGGc -3'
miRNA:   3'- aCCGUUUCAgCU------------UGuGGUGgUGCCCc -5'
5643 3' -54 NC_001806.1 + 79079 0.66 0.953799
Target:  5'- cGGCGAGGaCGuccucgccgccAGCGCCACCgACGaGGa -3'
miRNA:   3'- aCCGUUUCaGC-----------UUGUGGUGG-UGC-CCc -5'
5643 3' -54 NC_001806.1 + 22543 0.66 0.953401
Target:  5'- uUGGCGcgcGAGaacgCG-GCGCUgacggggGCCGCGGGGa -3'
miRNA:   3'- -ACCGU---UUCa---GCuUGUGG-------UGGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 25415 0.67 0.950128
Target:  5'- gGGCGAGGggcggugguggugcgCGGGCGCC-CC-CGGaGGg -3'
miRNA:   3'- aCCGUUUCa--------------GCUUGUGGuGGuGCC-CC- -5'
5643 3' -54 NC_001806.1 + 151455 0.67 0.949708
Target:  5'- cGGCGGGGcggccgCGGGCGCgCuccugACCGCGGGu -3'
miRNA:   3'- aCCGUUUCa-----GCUUGUG-G-----UGGUGCCCc -5'
5643 3' -54 NC_001806.1 + 51597 0.67 0.949708
Target:  5'- gGGCGAGGUgGAGCugCcCgGCGGc- -3'
miRNA:   3'- aCCGUUUCAgCUUGugGuGgUGCCcc -5'
5643 3' -54 NC_001806.1 + 120544 0.67 0.949708
Target:  5'- -cGCAGGGUcugCGAGCaauACCugCcCGGGGa -3'
miRNA:   3'- acCGUUUCA---GCUUG---UGGugGuGCCCC- -5'
5643 3' -54 NC_001806.1 + 132025 0.67 0.949708
Target:  5'- cGGC----UCGGAC-CCACgCACGGGa -3'
miRNA:   3'- aCCGuuucAGCUUGuGGUG-GUGCCCc -5'
5643 3' -54 NC_001806.1 + 23765 0.67 0.949708
Target:  5'- cGGCGAcGaCGAcgauaaccccCACCcCCACGGGGc -3'
miRNA:   3'- aCCGUUuCaGCUu---------GUGGuGGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 136181 0.67 0.949286
Target:  5'- gGGCGAA-UCGAAgACCAgacgguccccgguCCACaaGGGGg -3'
miRNA:   3'- aCCGUUUcAGCUUgUGGU-------------GGUG--CCCC- -5'
5643 3' -54 NC_001806.1 + 23001 0.67 0.947141
Target:  5'- cGGUucgugcgCGAcgcgcuggugcucauGCGCCugCGCGGGGa -3'
miRNA:   3'- aCCGuuuca--GCU---------------UGUGGugGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 104162 0.67 0.945382
Target:  5'- uUGGCGAAuUCGAACACgCagauGCaguCGGGGc -3'
miRNA:   3'- -ACCGUUUcAGCUUGUG-G----UGgu-GCCCC- -5'
5643 3' -54 NC_001806.1 + 2615 0.67 0.945382
Target:  5'- gUGGUccguGAGcUCGGcCACgGCgCGCGGGGa -3'
miRNA:   3'- -ACCGu---UUC-AGCUuGUGgUG-GUGCCCC- -5'
5643 3' -54 NC_001806.1 + 52586 0.67 0.945382
Target:  5'- cGGCccGGggGGGCAUCG-CGCGGGGg -3'
miRNA:   3'- aCCGuuUCagCUUGUGGUgGUGCCCC- -5'
5643 3' -54 NC_001806.1 + 134506 0.67 0.944937
Target:  5'- uUGGCAAAgGUCGAcggggugGCGugGCUuCGGGGg -3'
miRNA:   3'- -ACCGUUU-CAGCU-------UGUggUGGuGCCCC- -5'
5643 3' -54 NC_001806.1 + 136329 0.67 0.94082
Target:  5'- cGcGUGGAGUCGAAgGCCagcGCCAgcucaaaaaaccCGGGGc -3'
miRNA:   3'- aC-CGUUUCAGCUUgUGG---UGGU------------GCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.