miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5643 5' -58.8 NC_001806.1 + 34514 0.66 0.792642
Target:  5'- cGGCCCgGGggGUGGGaG-CGcGGGCCg- -3'
miRNA:   3'- -UUGGG-CCuuCACCC-CaGUuCCUGGga -5'
5643 5' -58.8 NC_001806.1 + 30420 0.66 0.792642
Target:  5'- gGGgCCGGgcGUGGaGGgugggCAcGGGCCCUc -3'
miRNA:   3'- -UUgGGCCuuCACC-CCa----GUuCCUGGGA- -5'
5643 5' -58.8 NC_001806.1 + 147681 0.66 0.774406
Target:  5'- -cCCCGGggGccGGGGcgCGGGGgcggGCCCc -3'
miRNA:   3'- uuGGGCCuuCa-CCCCa-GUUCC----UGGGa -5'
5643 5' -58.8 NC_001806.1 + 135101 0.66 0.774406
Target:  5'- cGACCgGGGAGgGGGG-CGGGGGCa-- -3'
miRNA:   3'- -UUGGgCCUUCaCCCCaGUUCCUGgga -5'
5643 5' -58.8 NC_001806.1 + 31703 0.66 0.774406
Target:  5'- uGCgUGGGAGUGGGGgugCGugggaguggGGGugCCa -3'
miRNA:   3'- uUGgGCCUUCACCCCa--GU---------UCCugGGa -5'
5643 5' -58.8 NC_001806.1 + 15178 0.66 0.765097
Target:  5'- gGGCCCGGGgacuggGGUaGGGuGUCAcGGGuCCCa -3'
miRNA:   3'- -UUGGGCCU------UCA-CCC-CAGU-UCCuGGGa -5'
5643 5' -58.8 NC_001806.1 + 148399 0.66 0.765097
Target:  5'- gGGCuCCGGGugGGUGGGcGaC-AGGGCCCUc -3'
miRNA:   3'- -UUG-GGCCU--UCACCC-CaGuUCCUGGGA- -5'
5643 5' -58.8 NC_001806.1 + 83315 0.66 0.764159
Target:  5'- -cCCCGGAucccuGUGGGGagGGgcuuuuggacaccGGGCCCUu -3'
miRNA:   3'- uuGGGCCUu----CACCCCagUU-------------CCUGGGA- -5'
5643 5' -58.8 NC_001806.1 + 83808 0.66 0.755672
Target:  5'- gGGCgaGGAGGgggcGGGGUCGgcgcGGGAUCCg -3'
miRNA:   3'- -UUGggCCUUCa---CCCCAGU----UCCUGGGa -5'
5643 5' -58.8 NC_001806.1 + 151271 0.66 0.755672
Target:  5'- cGCCgGGcGGUGGGGgCcGGGGCCg- -3'
miRNA:   3'- uUGGgCCuUCACCCCaGuUCCUGGga -5'
5643 5' -58.8 NC_001806.1 + 82399 0.67 0.74614
Target:  5'- cACCUGGAGGggaggcUGGaGGgagagUAGGGGCCCg -3'
miRNA:   3'- uUGGGCCUUC------ACC-CCa----GUUCCUGGGa -5'
5643 5' -58.8 NC_001806.1 + 41605 0.67 0.74614
Target:  5'- aAGCgCCGcGAucgccgGGGGUguGGGGCCCUg -3'
miRNA:   3'- -UUG-GGC-CUuca---CCCCAguUCCUGGGA- -5'
5643 5' -58.8 NC_001806.1 + 4173 0.67 0.73651
Target:  5'- cACCCGccccgGGGG-CGGGGGCCCg -3'
miRNA:   3'- uUGGGCcuucaCCCCaGUUCCUGGGa -5'
5643 5' -58.8 NC_001806.1 + 38875 0.67 0.726792
Target:  5'- gGACCCauGGGcGGGGUCGuuGGGAUCCa -3'
miRNA:   3'- -UUGGGccUUCaCCCCAGU--UCCUGGGa -5'
5643 5' -58.8 NC_001806.1 + 151746 0.67 0.716993
Target:  5'- -cCCCGGggGguguguuuUGGGG---GGGGCCCg -3'
miRNA:   3'- uuGGGCCuuC--------ACCCCaguUCCUGGGa -5'
5643 5' -58.8 NC_001806.1 + 36 0.67 0.716993
Target:  5'- -cCCCGGggGguguguuuUGGGG---GGGGCCCg -3'
miRNA:   3'- uuGGGCCuuC--------ACCCCaguUCCUGGGa -5'
5643 5' -58.8 NC_001806.1 + 83252 0.67 0.708113
Target:  5'- gGGCCCGcGggGgggcgggcgacggagGGGGUUcgggcgggcgcgGAGGACCCc -3'
miRNA:   3'- -UUGGGC-CuuCa--------------CCCCAG------------UUCCUGGGa -5'
5643 5' -58.8 NC_001806.1 + 120316 0.67 0.697192
Target:  5'- cACCUGGggGgacggGGcGGUCGGGGGCg-- -3'
miRNA:   3'- uUGGGCCuuCa----CC-CCAGUUCCUGgga -5'
5643 5' -58.8 NC_001806.1 + 43719 0.67 0.697192
Target:  5'- gAACCCGGucGggggggauUGGGGUgacCGAGGcGCCCUc -3'
miRNA:   3'- -UUGGGCCuuC--------ACCCCA---GUUCC-UGGGA- -5'
5643 5' -58.8 NC_001806.1 + 117060 0.68 0.687207
Target:  5'- aGACCCacggGGggGUGGGGgugggcaucCAGGGAgaaacCCCa -3'
miRNA:   3'- -UUGGG----CCuuCACCCCa--------GUUCCU-----GGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.