Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5646 | 3' | -62.1 | NC_001806.1 | + | 85306 | 1.09 | 0.00083 |
Target: 5'- cCCCCCUCCAGGACCUCUUGGCCGGGAu -3' miRNA: 3'- -GGGGGAGGUCCUGGAGAACCGGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 32958 | 0.75 | 0.205514 |
Target: 5'- gCCCCgggCCGGGGCCcCUUGgguccGCCGGGGc -3' miRNA: 3'- gGGGGa--GGUCCUGGaGAAC-----CGGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 2933 | 0.75 | 0.215411 |
Target: 5'- gCCgCCUCCGGGcgGCCgggCcgGGCCGGGAc -3' miRNA: 3'- -GGgGGAGGUCC--UGGa--GaaCCGGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 30622 | 0.73 | 0.277324 |
Target: 5'- cCCCCCUCCGa---CUCagGGCCGGGGg -3' miRNA: 3'- -GGGGGAGGUccugGAGaaCCGGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 72491 | 0.72 | 0.30986 |
Target: 5'- aCCCCCUgCGGGGCgagaUCgcgGGCCuGGGGg -3' miRNA: 3'- -GGGGGAgGUCCUGg---AGaa-CCGG-CCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 151258 | 0.72 | 0.328605 |
Target: 5'- cCCCCCgggCCcacgccgggcggugGGGGCCgg--GGCCGGGGg -3' miRNA: 3'- -GGGGGa--GG--------------UCCUGGagaaCCGGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 27235 | 0.71 | 0.382602 |
Target: 5'- cCCgCCCUCaCAGGgcgggccGCCUCggGGgCGGGAc -3' miRNA: 3'- -GG-GGGAG-GUCC-------UGGAGaaCCgGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 86008 | 0.71 | 0.391355 |
Target: 5'- gUCUC-CCGGGGgCgCUUGGCCGGGGa -3' miRNA: 3'- gGGGGaGGUCCUgGaGAACCGGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 47126 | 0.71 | 0.399425 |
Target: 5'- aCCCCacCCAauGGACCUCUUGGUCGa-- -3' miRNA: 3'- gGGGGa-GGU--CCUGGAGAACCGGCccu -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 41216 | 0.7 | 0.41922 |
Target: 5'- gCCCCgcgccuaaaguggcCCAGGGCCUCgugGaGCCGGcGAa -3' miRNA: 3'- gGGGGa-------------GGUCCUGGAGaa-C-CGGCC-CU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 30733 | 0.7 | 0.441323 |
Target: 5'- aCCCCCgCgGGGgccGCCUCUUccgccGCCGGGGc -3' miRNA: 3'- -GGGGGaGgUCC---UGGAGAAc----CGGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 87122 | 0.69 | 0.476572 |
Target: 5'- gCCCgCCUCCAGGugCgccaCUgcgucGGCCcucaGGGAg -3' miRNA: 3'- -GGG-GGAGGUCCugGa---GAa----CCGG----CCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 120886 | 0.69 | 0.476572 |
Target: 5'- gUCCCC-CgGGGACCUUgccccGGCCGGa- -3' miRNA: 3'- -GGGGGaGgUCCUGGAGaa---CCGGCCcu -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 83242 | 0.69 | 0.494712 |
Target: 5'- gCCCCCUCaAGGGCCcgCggggGGgCGGGc -3' miRNA: 3'- -GGGGGAGgUCCUGGa-Gaa--CCgGCCCu -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 37780 | 0.69 | 0.5039 |
Target: 5'- uUCgCUCCGGGGCCgg--GGCgCGGGGg -3' miRNA: 3'- gGGgGAGGUCCUGGagaaCCG-GCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 109517 | 0.69 | 0.5039 |
Target: 5'- aCCagggCCUCCAGcGAgCUCggGaGCCGGGGg -3' miRNA: 3'- -GGg---GGAGGUC-CUgGAGaaC-CGGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 81823 | 0.68 | 0.531885 |
Target: 5'- aCCCCg-CAGGGCCUgUgccacGGgCGGGAg -3' miRNA: 3'- gGGGGagGUCCUGGAgAa----CCgGCCCU- -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 3336 | 0.68 | 0.55085 |
Target: 5'- gUCCCUCCggccgcggGGGGCUggcgGGCCGGGc -3' miRNA: 3'- gGGGGAGG--------UCCUGGagaaCCGGCCCu -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 100084 | 0.68 | 0.55085 |
Target: 5'- aCCCCCggaccCCAGGGUCUCccgcGGCCGGc- -3' miRNA: 3'- -GGGGGa----GGUCCUGGAGaa--CCGGCCcu -5' |
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5646 | 3' | -62.1 | NC_001806.1 | + | 121400 | 0.68 | 0.55085 |
Target: 5'- cCCCCCggagCCGGGcgcgugcugcGCCUUg-GGCCcGGGGg -3' miRNA: 3'- -GGGGGa---GGUCC----------UGGAGaaCCGG-CCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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