miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5646 3' -62.1 NC_001806.1 + 65307 0.67 0.570017
Target:  5'- gCCCCCa--AGGGCCUC--GGUgGGGAc -3'
miRNA:   3'- -GGGGGaggUCCUGGAGaaCCGgCCCU- -5'
5646 3' -62.1 NC_001806.1 + 72491 0.72 0.30986
Target:  5'- aCCCCCUgCGGGGCgagaUCgcgGGCCuGGGGg -3'
miRNA:   3'- -GGGGGAgGUCCUGg---AGaa-CCGG-CCCU- -5'
5646 3' -62.1 NC_001806.1 + 79245 0.66 0.676963
Target:  5'- aCCCCCggcCCuguGGACCUUguuggGGCgGaGGGc -3'
miRNA:   3'- -GGGGGa--GGu--CCUGGAGaa---CCGgC-CCU- -5'
5646 3' -62.1 NC_001806.1 + 81823 0.68 0.531885
Target:  5'- aCCCCg-CAGGGCCUgUgccacGGgCGGGAg -3'
miRNA:   3'- gGGGGagGUCCUGGAgAa----CCgGCCCU- -5'
5646 3' -62.1 NC_001806.1 + 83242 0.69 0.494712
Target:  5'- gCCCCCUCaAGGGCCcgCggggGGgCGGGc -3'
miRNA:   3'- -GGGGGAGgUCCUGGa-Gaa--CCgGCCCu -5'
5646 3' -62.1 NC_001806.1 + 85119 0.66 0.638043
Target:  5'- aCCCUCUCCGGGAugggcuacuaCCUa--GGCauCGGGGg -3'
miRNA:   3'- -GGGGGAGGUCCU----------GGAgaaCCG--GCCCU- -5'
5646 3' -62.1 NC_001806.1 + 85306 1.09 0.00083
Target:  5'- cCCCCCUCCAGGACCUCUUGGCCGGGAu -3'
miRNA:   3'- -GGGGGAGGUCCUGGAGAACCGGCCCU- -5'
5646 3' -62.1 NC_001806.1 + 86008 0.71 0.391355
Target:  5'- gUCUC-CCGGGGgCgCUUGGCCGGGGa -3'
miRNA:   3'- gGGGGaGGUCCUgGaGAACCGGCCCU- -5'
5646 3' -62.1 NC_001806.1 + 86761 0.66 0.667265
Target:  5'- gCCgCCUCCGGGAaaUC--GGCCaGGAg -3'
miRNA:   3'- -GGgGGAGGUCCUggAGaaCCGGcCCU- -5'
5646 3' -62.1 NC_001806.1 + 87122 0.69 0.476572
Target:  5'- gCCCgCCUCCAGGugCgccaCUgcgucGGCCcucaGGGAg -3'
miRNA:   3'- -GGG-GGAGGUCCugGa---GAa----CCGG----CCCU- -5'
5646 3' -62.1 NC_001806.1 + 87363 0.66 0.676963
Target:  5'- uCCCCCUCCu---CCUCU-GGCCGc-- -3'
miRNA:   3'- -GGGGGAGGuccuGGAGAaCCGGCccu -5'
5646 3' -62.1 NC_001806.1 + 98687 0.66 0.628285
Target:  5'- aCCCCUuuGGGGCg-C-UGGCCGuGGGu -3'
miRNA:   3'- gGGGGAggUCCUGgaGaACCGGC-CCU- -5'
5646 3' -62.1 NC_001806.1 + 100084 0.68 0.55085
Target:  5'- aCCCCCggaccCCAGGGUCUCccgcGGCCGGc- -3'
miRNA:   3'- -GGGGGa----GGUCCUGGAGaa--CCGGCCcu -5'
5646 3' -62.1 NC_001806.1 + 100942 0.67 0.599052
Target:  5'- gCCCC-CCAGG-CgUUUugUGGCCaGGGAg -3'
miRNA:   3'- gGGGGaGGUCCuGgAGA--ACCGG-CCCU- -5'
5646 3' -62.1 NC_001806.1 + 106687 0.66 0.628285
Target:  5'- aCCCC-CCGGGGgCUCUUcccgGGCCcccGGGc -3'
miRNA:   3'- gGGGGaGGUCCUgGAGAA----CCGG---CCCu -5'
5646 3' -62.1 NC_001806.1 + 109517 0.69 0.5039
Target:  5'- aCCagggCCUCCAGcGAgCUCggGaGCCGGGGg -3'
miRNA:   3'- -GGg---GGAGGUC-CUgGAGaaC-CGGCCCU- -5'
5646 3' -62.1 NC_001806.1 + 120886 0.69 0.476572
Target:  5'- gUCCCC-CgGGGACCUUgccccGGCCGGa- -3'
miRNA:   3'- -GGGGGaGgUCCUGGAGaa---CCGGCCcu -5'
5646 3' -62.1 NC_001806.1 + 121400 0.68 0.55085
Target:  5'- cCCCCCggagCCGGGcgcgugcugcGCCUUg-GGCCcGGGGg -3'
miRNA:   3'- -GGGGGa---GGUCC----------UGGAGaaCCGG-CCCU- -5'
5646 3' -62.1 NC_001806.1 + 132994 0.66 0.638043
Target:  5'- gCUCCCU-CAGaGCC-CUgGGCCGGGGc -3'
miRNA:   3'- -GGGGGAgGUCcUGGaGAaCCGGCCCU- -5'
5646 3' -62.1 NC_001806.1 + 151258 0.72 0.328605
Target:  5'- cCCCCCgggCCcacgccgggcggugGGGGCCgg--GGCCGGGGg -3'
miRNA:   3'- -GGGGGa--GG--------------UCCUGGagaaCCGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.