miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5646 5' -51.9 NC_001806.1 + 57794 0.66 0.989524
Target:  5'- ---gUCGUCCuccguguccagggggACugGAUCUgcggGCGgGGg -3'
miRNA:   3'- aaaaAGCAGG---------------UGugCUAGGa---CGCgCC- -5'
5646 5' -51.9 NC_001806.1 + 133784 0.66 0.985828
Target:  5'- -------cCUGCGCGAaaUCCUGCGCGa -3'
miRNA:   3'- aaaaagcaGGUGUGCU--AGGACGCGCc -5'
5646 5' -51.9 NC_001806.1 + 139601 0.66 0.985828
Target:  5'- ---aUCGgcUCUGCGCGAUCCgaaCGUGGu -3'
miRNA:   3'- aaaaAGC--AGGUGUGCUAGGac-GCGCC- -5'
5646 5' -51.9 NC_001806.1 + 30207 0.67 0.979895
Target:  5'- ---gUCGggacCCGCGCGccCCcGCGCGGc -3'
miRNA:   3'- aaaaAGCa---GGUGUGCuaGGaCGCGCC- -5'
5646 5' -51.9 NC_001806.1 + 16737 0.67 0.977556
Target:  5'- ---aUCGUCCGCGgcAUCC-GCGCuGGg -3'
miRNA:   3'- aaaaAGCAGGUGUgcUAGGaCGCG-CC- -5'
5646 5' -51.9 NC_001806.1 + 5271 0.67 0.975022
Target:  5'- ----cCGUCgACGCGGaaCUaGCGCGGa -3'
miRNA:   3'- aaaaaGCAGgUGUGCUagGA-CGCGCC- -5'
5646 5' -51.9 NC_001806.1 + 5394 0.67 0.972286
Target:  5'- ----cUGUCuCugGCGGUCCcGCGuCGGg -3'
miRNA:   3'- aaaaaGCAG-GugUGCUAGGaCGC-GCC- -5'
5646 5' -51.9 NC_001806.1 + 3454 0.67 0.972286
Target:  5'- ---cUCGacggCCACGCGGccggCCUggGCGCGGc -3'
miRNA:   3'- aaaaAGCa---GGUGUGCUa---GGA--CGCGCC- -5'
5646 5' -51.9 NC_001806.1 + 125682 0.67 0.969341
Target:  5'- ----aCGUUCGaGCGccaCCUGCGCGGg -3'
miRNA:   3'- aaaaaGCAGGUgUGCua-GGACGCGCC- -5'
5646 5' -51.9 NC_001806.1 + 112124 0.67 0.969341
Target:  5'- ----aCGUCCAgGCcGUCCUcggggcguuugaGCGCGGc -3'
miRNA:   3'- aaaaaGCAGGUgUGcUAGGA------------CGCGCC- -5'
5646 5' -51.9 NC_001806.1 + 2502 0.68 0.962792
Target:  5'- ----cCG-CCGCACGcggCCUGgGCGGc -3'
miRNA:   3'- aaaaaGCaGGUGUGCua-GGACgCGCC- -5'
5646 5' -51.9 NC_001806.1 + 56616 0.68 0.946909
Target:  5'- gUUUUCGggCCGCGCGAcCCUG-GCcGGu -3'
miRNA:   3'- aAAAAGCa-GGUGUGCUaGGACgCG-CC- -5'
5646 5' -51.9 NC_001806.1 + 94585 0.69 0.9271
Target:  5'- ----cCGUCC-CACc--CCUGCGCGGu -3'
miRNA:   3'- aaaaaGCAGGuGUGcuaGGACGCGCC- -5'
5646 5' -51.9 NC_001806.1 + 123237 0.69 0.921518
Target:  5'- ----cCGcCCACGCGGcCCUGCGCc- -3'
miRNA:   3'- aaaaaGCaGGUGUGCUaGGACGCGcc -5'
5646 5' -51.9 NC_001806.1 + 67280 0.69 0.921518
Target:  5'- ----gCGUCCcaGCACGAUCC-GCGuUGGg -3'
miRNA:   3'- aaaaaGCAGG--UGUGCUAGGaCGC-GCC- -5'
5646 5' -51.9 NC_001806.1 + 119464 0.7 0.909602
Target:  5'- ----cCG-CCACcCGGUCCgaGCGCGGa -3'
miRNA:   3'- aaaaaGCaGGUGuGCUAGGa-CGCGCC- -5'
5646 5' -51.9 NC_001806.1 + 23003 0.7 0.905832
Target:  5'- --gUUCGUgCGCgacgcgcuggugcucAUGcgCCUGCGCGGg -3'
miRNA:   3'- aaaAAGCAgGUG---------------UGCuaGGACGCGCC- -5'
5646 5' -51.9 NC_001806.1 + 74867 0.72 0.835711
Target:  5'- ----cCGUCCugGCGAcCCUGCG-GGc -3'
miRNA:   3'- aaaaaGCAGGugUGCUaGGACGCgCC- -5'
5646 5' -51.9 NC_001806.1 + 5349 0.73 0.781629
Target:  5'- --cUUCGUCCGCGuauCGGcgUCCcgGCGCGGc -3'
miRNA:   3'- aaaAAGCAGGUGU---GCU--AGGa-CGCGCC- -5'
5646 5' -51.9 NC_001806.1 + 20808 0.73 0.772065
Target:  5'- ---aUCGUCCACACGGa---GCGCGGc -3'
miRNA:   3'- aaaaAGCAGGUGUGCUaggaCGCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.